RNA id: TU121703


Basic Information

Item Value
RNA id TU121703
length 1361
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G97612
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8777217 ~ 8779046 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTACCTTTAAGAAGGGGCAGTGGCGTGAGTTCCACCTGGGAACTCTGGTATCGGAACTGGGACGAGCTGTGCGATCGCCTCTGCCGGGCTCGGCGCATCGACCGGCGGGGGAAGCCATCGACTTTCTCGGCGCTGGGGACGGAGAAGCTGGTGGTGGGGGAAGAGGGGCTGGAAGCGGGCAGTTTAGTCGTCTCCATTGTGGAAGGAATGGAtgagggaaggaggaggaggagggagaggacgAGGCGGTGGAGGTGGCGGGGTAATGGCAGTAGTAGTcgttgtaataataatttaatgcataaaggagcaatatataaataacgGAATAAATAAAGACTATAGAGAGGTAGTAGTCCGGATACGTGCGGGGAGAagagagggggcggggggtgtAGGGATGGGATAAATACAGAATTGGAGATAGGCTGCAGACAGTTAGTTGATGCGGATTGGCGCAGCTGGCGGGGTAGAGGACCGCTACCTAGTGATGCTCAGGGCTGACAGTGCGCTTTATATGACACGcgtttctgtatgtatatatatatatagctgggCGTTTAGACGGCCAGCCGAGATAGGCTAGCCTCTCGCTatagatcaaattaaaaaatatatatcaaaattaattgaaaatgatgctataaaaaaaaaaaaatcctttcgtTCGCCCGTGCCGCTGTCGTCAATGGACGTGCGGTGTCCTTTGACGTGTTTATTTCAAGGAAGGGaagacgcgcacacacacaattcccAACAACGTGTTTATGTAGACAGGTCCAATCACACACgttcattcattcttttttcttctccccctccTTCCTCCCCCGTTTcggttttattgtattttgaagtCAGCCGAGTCCGGGGTCACACGCGATATCCGTCTCGGTCCACGGCCACgggagggagaaaaacacaCGGATGTGCTCTCGCCCctccaagaaagaaagaaatggaggaaaagaaaggaagcCGCTTTCAccccttttctctcctctctgtccctccgTGACGATcgtcccccctctctctccgttattgtaattgcaattattattcCATAGAAGGAAtctcttttctttcctcctctctcgAGTGCTCTCGTAGCCGACTGTACCTGCATCCACACTTAAATCCAATTGAATGCAAACGAAACCGGATCCTGCGGCGAACCCGGGCCGGACGGCTCAGATGCGGTGGGCGCGTCGGCTGTAGCGGCGCCTCATTGTCCGGTGCTTCTTCAAAGGCTCGCTGCTGTTCCGCCGCCCGAATCGAATGCTGATCTGAATTCGGGAGGCTCGATTTGACGCATTCCGGGGCGGGTCGCGGCGCCGTGGGTGTGAgcagacgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121670 lncRNA upstream 57655 8719241 ~ 8719562 (+) True G97588
TU121635 lncRNA upstream 84575 8692428 ~ 8692642 (+) True G97560
TU121621 lncRNA upstream 152530 8624089 ~ 8624687 (+) False G97547
TU121620 lncRNA upstream 152741 8624089 ~ 8624476 (+) True G97547
TU121616 lncRNA upstream 160897 8613255 ~ 8616320 (+) True G97543
TU121720 lncRNA downstream 4700 8783746 ~ 8783991 (+) True G97618
TU121721 lncRNA downstream 5166 8784212 ~ 8785276 (+) True G97619
TU121722 lncRNA downstream 10514 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA downstream 10644 8789690 ~ 8790667 (+) False G97620
TU121729 lncRNA downstream 18025 8797071 ~ 9124271 (+) False AMCG00015412
AMCG00015382 mRNA upstream 24171 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 34732 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 45456 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015376 mRNA upstream 122108 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015377 mRNA upstream 164353 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015391 mRNA downstream 19187 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015389 mRNA downstream 23381 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015392 mRNA downstream 46466 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015390 mRNA downstream 104073 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015397 mRNA downstream 107130 8886176 ~ 8891321 (+) False AMCG00015397
TU121633 other upstream 89537 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 232435 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 243813 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 345097 8342493 ~ 8432120 (+) False AMCG00015365
TU121740 other downstream 49690 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 98246 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 172747 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 172747 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 172747 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile