RNA id: TU121720


Basic Information

Item Value
RNA id TU121720
length 246
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G97618
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8783746 ~ 8783991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACTGCACGGCTCTAGCTAACAGCATGCACTCCCTGCCCACAGGACTGTATTATACATGACTTTGGTCTCGCACCTCGATCACCCCCCTCACCTCGTGCAGGACGTCGGCGCGCTCCGTCTGTTTCTTGCGGCTCCTCTGCGCCGCCACGCGGTTCTTCTCCCGGCGCTTGAGGCTCTTTTCCGGATGGCAGCCCTGGAAGACCATCAGATGAGCGCTTAATGAACACCACTTTACATCCATTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121703 lncRNA upstream 4700 8777217 ~ 8779046 (+) True G97612
TU121670 lncRNA upstream 64184 8719241 ~ 8719562 (+) True G97588
TU121635 lncRNA upstream 91104 8692428 ~ 8692642 (+) True G97560
TU121621 lncRNA upstream 159059 8624089 ~ 8624687 (+) False G97547
TU121620 lncRNA upstream 159270 8624089 ~ 8624476 (+) True G97547
TU121721 lncRNA downstream 221 8784212 ~ 8785276 (+) True G97619
TU121722 lncRNA downstream 5569 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA downstream 5699 8789690 ~ 8790667 (+) False G97620
TU121729 lncRNA downstream 13080 8797071 ~ 9124271 (+) False AMCG00015412
TU121730 lncRNA downstream 13080 8797071 ~ 9124271 (+) False AMCG00015412
AMCG00015382 mRNA upstream 30700 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 41261 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 51985 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015376 mRNA upstream 128637 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015377 mRNA upstream 170882 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015391 mRNA downstream 14242 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015389 mRNA downstream 18436 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015392 mRNA downstream 41521 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015390 mRNA downstream 99128 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015397 mRNA downstream 102185 8886176 ~ 8891321 (+) False AMCG00015397
TU121633 other upstream 96066 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 238964 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 250342 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 351626 8342493 ~ 8432120 (+) False AMCG00015365
TU121740 other downstream 44745 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 93301 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 167802 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 167802 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 167802 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile