RNA id: TU121726



Basic Information


Item Value
RNA id TU121726
length 978
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G97620
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8789560 ~ 8790667 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACGCACGCAGGCACGCACATGTGTGTCAAGGTATGCGTGGACATGGGTGCGTCTCGTACGCGTGTCACTAACGAAGGAAAACAACGTGACGCCACCAGGAGAGTGTTACAGAATGCGGTGTTTTATTAAGGCGGAGATGGAGGACAGCGGCTTCATGACAGAGGAGGTTAAAAAAAGACttcctggtttaaaaaaaacaaaacataaacaaacccaAACCAAAGCGAATGCCTTACTTCTCAAACTAAGAACCAATTGGAACACATAAAGTGGgattatttaactttaaacaaGAGCAcacagattattaaaaaaaaaataaaaaaaaaaattaaattaaaaataaaatcggGTTCGATCTGACAATCCGGGAGAGGAAGACTACGTTTTGAAAAGTGAAACCAaagaatttttaaaaacaaatcacatgtatgtatatttatgtataattatatttatatctcTATATGAAGAGTGAAGCAGTGAGAGGAGCTTTACAAGTCGAGCAGAAACAGGGAGGTTACAGAGCAGCGCAGAGCAACTTGATACAGCGACGACAACCCAgactattaataaaaaaacaaaattaaaatcagaatcATCGTGATCATTCAACCAACCAAAGCCCTAGCACAAGGATTCACCCCTCCCAGCTTCAGAACAAACGAGCGTCTCAGaaaaatggaggaaaaaaataaattaaagaaatcaGTGTCGGCTTAAAAAGAATGATTATAATCAGGAGAAATACTCCTCATcaacatcaccatcatcatcagtgTTGATTCCTTTATAACATTCCGGCCTGTTAAATCcgagtgacagacagacaaaccagCAGCAGGAGCAAAATCGCGACGCAGGCGGGAGCACAAACTCCTGcgttttttaaggtttttttaagtttttttttttttaatgtttccgTTTTGGTTCGTGTCGGAGTGGTGGGCTGGACCGTCCTATGGGTCACTGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121721 lncRNA upstream 4414 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 5699 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 10644 8777217 ~ 8779046 (+) True G97612
TU121670 lncRNA upstream 70128 8719241 ~ 8719562 (+) True G97588
TU121635 lncRNA upstream 97048 8692428 ~ 8692642 (+) True G97560
TU121729 lncRNA downstream 6404 8797071 ~ 9124271 (+) False AMCG00015412
TU121730 lncRNA downstream 6404 8797071 ~ 9124271 (+) False AMCG00015412
TU121731 lncRNA downstream 6404 8797071 ~ 9124271 (+) False AMCG00015412
TU121732 lncRNA downstream 6404 8797071 ~ 9124271 (+) True AMCG00015412
TU121754 lncRNA downstream 121347 8912014 ~ 8964118 (+) True G97640
AMCG00015382 mRNA upstream 36644 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 47205 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 57929 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015376 mRNA upstream 134581 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015377 mRNA upstream 176826 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015391 mRNA downstream 7566 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015389 mRNA downstream 11760 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015392 mRNA downstream 34845 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015390 mRNA downstream 92452 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015397 mRNA downstream 95509 8886176 ~ 8891321 (+) False AMCG00015397
TU121633 other upstream 102010 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 244908 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 256286 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 357570 8342493 ~ 8432120 (+) False AMCG00015365
TU121740 other downstream 38069 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 86625 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 161126 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 161126 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 161126 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile