RNA id: TU121733


Basic Information

Item Value
RNA id TU121733
length 3300
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G97623
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9067943 ~ 9072295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGAAGGAAAATGTGCAAGTCTACTATAAAAATACAGTCAACATATAAAATTAcagatgccttgtacttctctgtattttgcacttatgttgcaagtcgccctggataagggcgtctgccaagaaataaaaaataataacatgacCATAATCCATAATGGTATCAAGTTCTAGGAAGAATCTTTCATGTTCAATTGCTTTTCTGAATTAATtccaattaattttatattaaatcgTTCAGCAATAAGGGTTTTACATCCTACCACACAGAATTAAATAGTTCAATGCAAGGCCTTGAGTTGAACTGGAGGGCGATTCTACGTTGTGCCAAGATATCCATGAAACGGTTTGCTCTCGAGGGCTTAAGCATTACAACCTAGCCTTCACACTAAAACCTGGTTGTGGTGCAGCGATTTACACACCTGAAGTTGTACAGAACCAGCTCCCAGGATACAGagcatatttaaacatttttttttttagccaagATCTCGGTCCTGCAGGCCTACATACCTTTTTCTACGGAGCACCTTGACCCAGCTTTGCACTCACAAGATCAACGATACCCTGCCAGCCACGCAACAGTTGACAAGCCATGAATGCATTGATTTTACATTAATGCTCAATGGAAGATGATATTTAACAATTTTAGCAGGACTAAAATGGCTGATTTCAAACaagatttaaaaagcaatgcatgGTTAGAATATGCAAGTTAACATTAATgctttgcaaaaaacaaataagataaGACTTACATTTACCGATTGCCTAATAATCCTGCCATAGATCCTgacattgttttgcattatatatttttccttcatttcttgGACACAAGTACAAGTTGGCACAGGTCAAGAGATTTACACATACAAGTTACAGTAAACAGTAATTTTGTTCTGTCCGTTATGGTGAATAGGCCCTTAGGTTAGATGGCCAGCGGCCAACTGGGCCGCGATGTCGAGAATTGCAGAAAACAGCCTCCTCTGAGGGGGAGACCCATCCCAATGCATCGCCATATGCTGAAGGTCCTTTATGGGTCAGAGGTCAACCCCAACGGCCATAGATCCACACCCCACTACAGCCCCACAGAGGCACGGGGGCGGCTGCTACACTTGCACAGCTCTAGGTGAAGACATCATATCCTTCATCCGAttgcttcagtttttatttgtggtCCGGATTTAACGCAGCATAAACTCCTGCCATGgtctcctccccccccccccccccccccccccccccccccaacacccacGGTGTGACTGGGGCCAGGGCTGTGCGAGTGTGCCACCTTCCCCCACTCGCCTGGTCACATGGGACAGCTCCTTAAAGCCAAACAGATCAGATGGGAAGGGGGGGCTGCACTGCTGCACCACAAATGCTGATGAGGTCACCCTGCTGCCTGCATGGGCCAGGACTGAGCATGCGCACTCGGCCGTCTGGAACTTTCCATGCTCTTTAAACATGACTGATCTGAAAAGAGGCTGAAGGACAATGTTGTGTAAataccccccaacccccacacaaccacacaaccaCGTCACCACATATGGACACACAGCACCGCTAGAGACAGTGTAAAAACAAGTCAAACCTAGTTAAGACCGGTCGGGGTTTCTCAGTTCCGGTCCGGGGAGCCTAGAGAGTCCGACCACCGCCCAACGATTGTTccagaataaatacagattttacatCGCTATTACTGCCCTTCAGACATTGAAGCGCCACAGTAGACCCGGGCCATGAGGAGGACTGTACAGGATCCCTGGGGAAGAATCTAGAAACCCAAATACACTAAAGCAAATGTACGGTCGCTTCTTTACAGGATTAAATTGCGCTAATGAATAGGATCTCGCACAGCACGGCACGCAGCGGCGGGACTGACCGGCCACAAGTGCGAGGAGAAAATCTGCCTTTCAAAACCATAGAAAACGCCAAGATCCCCTTACACGTAACTTGGTTAAAATCACGGGGGAAATAGACATCGCAGAGTCGATTGTAATCGAATGCTCCTACACGTCCAGACCCTCATGGACAGGGTGTCCCGAGCGTGGCTCCTCGTCGCGACCCCCGTCTGAAGACCCAGTTGTCCACAACGTAGATACAAGTTTGCTTTGCTTGATTGAAGCGACCGAACGAGAAACTAGGCATCGTCCCacgaaaaaaaacaaaaaaacaaaaatcctggAGAAAAACTATGGGTGTCGCAACACCTCTAACCGGATGACTGGCTTTAAAATCTCTTGCACTGCTTTACCTCCGACAGCGCTTACAGGAGTTGTATTTTCATGACACCAAAGCATCGATTCGCCTTTCCTGCCGCACTCCTCAATACGCGGGGGCCTGTGCGGCCTCTTCGGGCTTCAATCGCCACCCACCCGCAGACCACCTTCCACGCAGCTAATTACTGCACGTAATGGCGTCACTGCTACCGTTTGATAAGCGGAGATACCGGGCGGTTTATAGTTACCTCTCGCCGGGGACAAACACACACCGAGTccacaaaacattaggaacagcTGGCCGTGGCGACTCCCAGgcttccccccctcctcccggGATCGCAGCCACCCCACGGTCCTGCAGGGCCCGCTTTTATGGGCGTCTGGGCCCCGCGGGTGTGCTGCGCGGTCAGTTGCCCGACCGTCCCTCTGCACAAGGCGGCTCAGCCTCCTCTGACCCCTCTCGTCAATGAGCCGCTTGCGCCCGCTGGCTGGAGGTCTTTTGGGCGGTGCACCATGCCTGATACACACGGGACACGGCCGAGCGAGAGAAGCCCAGCAGGGCGGCCGTCCTGGGCACACCCGAGCCGCTCTGCCCGGCTGAGGGCACTCCGATCCCTGGCCTTGCCATTTACCCGTGAGTGACGCGATGCACAACCCGCCTGTTACGGGTCTGTTTCACGGGAAgagcaggtgttcctaatgCTTTGTTCACTCGGTGCACATTACCCGTCACGCCGCTGCCTTCGGACACCAAACCTCTGCTCTGGCGGGTTGATCGCCGGGTGGGTCGGTCGCCGTCCAGGTCTCTGCAAGATACTGCAAACTGCCAGTTGGTGACGCCAGGAATGAAGTGCCGCGCTGCAGCTCGCATATTTATACACTGTAAACGGTACGCACTACCTCTTCATAAACCTTCCGCACAAGGCGGGGGAAGGTGGGGGTAATATAGCCCtccctattgttattgttccaTTTCCCAAAACGCAGGACagcatatgcaaataaatacacaatgtgtCCAAATCCTTATCGATATAGCTGTTCACTGGCAATCCTGATGTATTGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121804 lncRNA upstream 35158 9029717 ~ 9032785 (+) False AMCG00015407
TU121799 lncRNA upstream 37544 9024645 ~ 9030399 (+) True G97676
TU121783 lncRNA upstream 83035 8983502 ~ 8984908 (+) True G97663
TU121779 lncRNA upstream 89939 8971466 ~ 8978004 (+) False AMCG00015398
TU121754 lncRNA upstream 103825 8912014 ~ 8964118 (+) True G97640
TU121874 lncRNA downstream 147541 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 150341 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 165538 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 248747 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 255341 9327636 ~ 9331026 (+) True G97770
AMCG00015406 mRNA upstream 4467 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015407 mRNA upstream 31328 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015398 mRNA upstream 90856 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015399 mRNA upstream 102293 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015396 mRNA upstream 114259 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015412 mRNA downstream 49109 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015413 mRNA downstream 55740 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 66909 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015416 mRNA downstream 83203 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015417 mRNA downstream 185887 9258182 ~ 9261673 (+) True AMCG00015417
TU121801 other upstream 35158 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 114268 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 114268 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 114268 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 174927 8828736 ~ 8893016 (+) True AMCG00015397
TU122193 other downstream 633802 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 684778 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 743423 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 857297 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 1013133 10085428 ~ 10086512 (+) False G98093

Expression Profile