RNA id: TU121770


Basic Information

Item Value
RNA id TU121770
length 3634
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G97650
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8942424 ~ 8950080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCTCAGCCCAGTCACTGACACAGACCTGCGCGGCTGTAAACAGATGCAGTTTCCACGGCAACCAGAGGAGCACTCCGCTGGGCGCCATGGATACTATAGAACTgagcaacagagagagacagggagagaaatggggagagagagattgaatgGGAGCtggggaaagagagggaaagggagagacagaggggggtaagggggaggggggtaagTGGCGTAGAGTAAAAAGGGGGCCAAGGggatgtaattattattacctCTCCTCTATgccccccgtctctctctctctctctctctctctctctctctctctctctctccctctcgctctcagTGAGTGTTTTACAGActacaccaaaaaaataaatggtaccCTCGGCTCCACAGTGTAGgaagagggagatggagggagggatagagggaAGGGTtagaaggagggaggagagatagagagggagggcTGGGTGAAGCTGGCATTGcccacaaacacaacaaagagccgagacagacagacagagagagagagcaatgtaGAGAGTGACGGAGTGAAGGAAGGAGAAAGGACAAAGAAGGATAGATACAGTGTTTTGTAACACATATACCATAAATATAAAGTTCTATGCTACACTATACTCTACTtgactatactacactatataCTACACCAATACATCATCCCCCCAGAGCTGTGAGACGCTCCAATACTGATTCTGAAAAGGGCATCGCAGTGTACACCACACAcataatacacaacacacacaatacacaacaacacattatatacaatatacaatgtacacacattacaaaaacaaattaaacaatatataaaatacacaacacatcATACACATTACgtaaattatacaatacataacACACAATGCATAACTCACACAATAGACACAGTGTACAATACACAGTACACATATACAGTTCGCAGAACTACACATGCagttaaaacaatgcatattatacacaatacacacgATACATCATACAACAAAGATACaacacagaagaaacaaaacaatacaaacacagcacatatacaatacacacatactgacatAAACTGACATGCATTGACACAATAGCACACATACTGATTCACATAATGACAatcacacacccacactgatATACTAACgtatacactgacacacacaaactgacatactgacacactgacacacacaccagtgtatTATACCATAATAGATGGTCACAGTCTGTGATATCAGTCTACAGTGCCAGTGTACAGTAACAACTACTCTGTACAGTGTTAAAgttttacagtgtacagtgtgacAGTGTACAGTTGTACAGTGTGACAGTATGACAGTATACAGTTTTACAGTGTATAGGTTTACAGTGTGACAACATACAGTGTACAgttttacagtgtacagtatacagtgttacagtgtgaCAGTGTATAGTTTTACATTGTGACAGTATACAGTGTACAGTTTTACAGTGTGACAATATACAGTTACAGTGTGACAGTATACAGTGTACAATTTTACAGTGTACAATGTACAGTGTTACAGTGTACATTTGTACGgtgtacagtatacagtgttacagtgtgacagtgtacaattttacagtgttacagtgtggCAGTATACAGTGTAGAgttttacagtgtacagtgttaCAATGTGACAGTaaacagtgtacagtgtacagttTTAGTGTGACAGTATACAGTGTACAGTTTTAGAGTGTGACAGTGTACTGTGTAACAGTGCaacagtgtacagtgtacagttTTACAGTGTGACAGTATACAGTGTAACCGTATACAGTTTTACAGTGTGAGAGTATACAGTGTACAGTCTTAGAGTGtgacagtgtacagtgtacagttTTACAGTGTGACAATgtgacagtgtacagtgtgagtgTTACAATATACAGTGTGACAGCACCCCCCTGCTATACTCACATGCCAGATGATGAAGAAGATGAGGGCAGCGCACAGCACTAGCGTCAGCATGTAGCAGAACGCAGCGAACGTGAACGCCATGGCAACGCCCGCCAGCTCTCCGCCCTGCCCCTCCACTCCTCCGTTTGTCCACTCCTCCTCTACTGTATGACCGTTCCCTCACTCacgctccctccctctccctgtctctctctccctcacgcTCCCTCTCTCGCCTGCTtctcttgtgttgtgttgttttgtttttgtttggttttcctcTGTCACTCCTTCGtctccccccttctctcctcctctcctctcttcttttctcctctctccacgGGTGTCTTTGAGGGACTGCTGTCCCTCTGTCTTCTCTCTGtcccctctcctcttctccctctctctctctctgtctgtccctctatAGGAGCCACACAGTGTATAAGTCTTGGGGCTCCGGCTTCACAATGGGACACACCACacttatcaataataataataatattattaataataataaaaataataataataataaaataataataataatgaaattgtCTTAGTGCTCTTGAAAAAAATACCAAGGATAGTATTAATTTATgaccagtaataataataataacaataatacccAGAAGATTACCAAGAGCTAAAACGACACTGTCTACGTTATTGCATTTGACAACTTACAGCAATAATCCTCAtcactctcttcctcctcctcatcttcatcatcacGGTGCGAATAACAGGAccgagagaggagagagacggcaggcggcagcagcagccgcACAATCCTGGATGCTGCCTGCGTTAGATCTGAGAGTGCAGCTGCTCTGCCTGCCTCGaacacacagcaacagcaaccaTAATCACGAGCATGAGAATCATATGAATTATAATGCAATTGTCTCAGCGCGCACGCGGAAAATAATATCAAGGATGACACTAATTAATGGCCAATgagaataacaacaataagaataaataatatgtcTTAGCGCCCACAAAATGTAATACCGAGGATTAATACTAATCAATGgccagtaataataacaataataatatgaataataataagtaacTTCTCTCCGAGGCTCTGAAGTGCAGTCACTGGTCTTCAGGGAGGGTGGGAGAGGGATGAGAGCTCAGTGCCAGTCCTGCGAAGACTGGACTGGCAGTGCCTAGCTGTTGCCCATGGCAGTGCCTCTGGGTTAGGTCCAACAGCACGGGCTCCCCCAGCTTCTGGGTGTCAGTCCAGCAGCAGATCCAGGGCCCAGCCTTGGCTGTCCATCTCCTTGGTTGGTGTGGTGGAGCGATCGATCTGATCTTGTTGGCTGTGCTCCTGGACAGGCAGGCAGCCGGTCAGTGGGGCGCTCGGTGGGATGAgacgggaggaggagggaaggggagagggaagtagagaaaggagaaagaggaaaaagagaggggggggggggaacgaCAGGAGCTGCctaccccccctcctccctccccctcagagagctgaaaccaaaacaaaaaggggaaaaatggAAAggctgtttgtctctctctctctgaatccctctctctctctgtgtgcctctctctctctcagtctctgccTGTCTCGGTGTTGagctccctctctgtctctccctctctcggtcTCTGTCGTTCTCTCTCTCTNNctcgctctctct

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121722 lncRNA upstream 151757 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 151757 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 157148 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 158433 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 163378 8777217 ~ 8779046 (+) True G97612
TU121779 lncRNA downstream 21386 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 33422 8983502 ~ 8984908 (+) True G97663
TU121799 lncRNA downstream 74565 9024645 ~ 9030399 (+) True G97676
TU121804 lncRNA downstream 79637 9029717 ~ 9032785 (+) False AMCG00015407
TU121733 lncRNA downstream 117863 9067943 ~ 9072295 (+) True G97623
AMCG00015395 mRNA upstream 12648 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 51103 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015390 mRNA upstream 57527 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015392 mRNA upstream 110710 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015389 mRNA upstream 133223 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015396 mRNA downstream 1656 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015399 mRNA downstream 14380 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015398 mRNA downstream 25262 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015407 mRNA downstream 79477 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015406 mRNA downstream 106693 9056773 ~ 9063476 (+) True AMCG00015406
TU121740 other upstream 49408 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other upstream 58471 8877292 ~ 8883953 (+) False AMCG00015390
TU121633 other upstream 254744 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 397642 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 409020 8529018 ~ 8533404 (+) True AMCG00015368
TU121758 other downstream 1713 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 1713 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 1713 8951793 ~ 8953675 (+) False AMCG00015396
TU121801 other downstream 79637 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 756017 9706097 ~ 9710729 (+) True G98000

Expression Profile