RNA id: TU121783



Basic Information


Item Value
RNA id TU121783
length 1097
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G97663
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8983502 ~ 8984908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cctggacagTGCAGGGGAAGGGCCAAAGCGGCTGTGGGAACCATGCATGGAGGACTCAGTGAAGGAGACAGAAGGAATtaagatttttaaattttttaaatttattattttctcacttTACACTTTCTGCATAGGCAGCCCAGAGAGAAGGTGTTAAGCTCATGAAGTTAACCAGTCTCTcactgacctttgacctctctcACAGTTGACATCTCCCATTTCACCATAACCTCCAACCCCTCATGTTCACCCTCCACGAGCCCTAATCTCCCACCCCTGACCTTTGAACCCCCCTCTCACAGCTGGCATCTCTCCTCACTTGTACCCGCCGTGACCTCCGACCCCTCCGGAGCGCTTAGCCCCTCTCGCAGATGACCTCGATGACACTCTGCTCCATGGGGGCGGGGTCCAGGCAGCGGTGGGCGGAGCTGCCCACAATCTCGTCCAGCAGGAAGTGGACGAGGTTCTCGTCGGACACGAAGCGCCACAGGTACAGCTGCAGGTAGTGGCAATCCACCTGGATCTGCTGCAGCCCGTAGCGCCCGAACGTCCGCAGCCGCACACACTCCAGGAACGTCTTCAGGCTGATCTTAATGATCCCGGTCAGCACAGACACCTGCACCCAGTGGACCcttGTTGAACTCCACTGGGCTGAAGATGTCAATGCGCTCTGAGAACAGTTTCTGGATGTTACTCAGCAGGTTGGTGTCCATGGGGGCGCTGCGCAGGATGAGGGGGCggagagatagacagacagacagagagatagcAGTTGTGGTTGTGCAGCTGTGTCTGGAGGTGTAACAGGTGGCGTAGcggtgtgtgtgttgatgtgggttgtgtttttgttgtgtgtttgtgtatcagtgtgGCCGTGTTCTGTGTGGTTGTAGTTGTGTACCTAGGggtgtagctgtgtgtgtgtgtggttgtgtacCTGGGggtgtagctgtgtgtgtgtgtgtggttgtgtacCTGGGGGTGTAACTGGGTGCGTAGCGGGCGGGCTGCCGGGAGCTGCTGTACACAGAGAAGGTCCTCCTGCTGGAATCACTGCTGTGGGCCTTCCTCACCCCCTCCTCATACAGCATCCCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121779 lncRNA upstream 5498 8971466 ~ 8978004 (+) False AMCG00015398
TU121754 lncRNA upstream 19384 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA upstream 21777 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA upstream 33422 8942424 ~ 8950080 (+) True G97650
TU121722 lncRNA upstream 192835 8789560 ~ 8790667 (+) True G97620
TU121799 lncRNA downstream 39737 9024645 ~ 9030399 (+) True G97676
TU121804 lncRNA downstream 44809 9029717 ~ 9032785 (+) False AMCG00015407
TU121733 lncRNA downstream 83035 9067943 ~ 9072295 (+) True G97623
TU121874 lncRNA downstream 234928 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 237728 9222636 ~ 9223257 (+) True G97741
AMCG00015398 mRNA upstream 6415 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015399 mRNA upstream 17852 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015396 mRNA upstream 29818 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015395 mRNA upstream 53726 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 92181 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015407 mRNA downstream 44649 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015406 mRNA downstream 71865 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015412 mRNA downstream 136496 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015413 mRNA downstream 143127 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 154296 9139204 ~ 9139449 (+) True AMCG00015414
TU121758 other upstream 29827 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 29827 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 29827 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 90486 8828736 ~ 8893016 (+) True AMCG00015397
TU121801 other downstream 44809 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 721189 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 772165 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 830810 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 944684 9929592 ~ 9930804 (+) False AMCG00015464

Expression Profile