RNA id: TU121878


Basic Information

Item Value
RNA id TU121878
length 378
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G97741
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9222636 ~ 9223257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTTCTTGGACATCTTGGGAACGTCCGGCCGGGCTTCCTCATCGCTGTCATCGCtgtctttcttctcctcctcaaAGCCCTTCTTCTTCACCGCCATGGCCTCCAGCTTCTCTGCCTTCTCCGGctccttttccttctccttcttcacGTCATCCGTGAGCTTAAAGGCCTCGAAGATCCTCTTGAAGAAGATGAAGTTGGGGTCATAGATCTCAGGCTCCTCCGTGATGTATTCAATCTCCACTTCTGGCTCGCTCTCCTTGACCTtctccccctctgcctctccaTTCACCTCCCCCACCTTCTTCTCCTCCACCCCTGCCGCCTTGCcagtcttcttcttcttcttcttcctgttCCGGCGCTTGCGGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121874 lncRNA upstream 2352 9219836 ~ 9220284 (+) True G97737
TU121729 lncRNA upstream 98365 8797071 ~ 9124271 (+) False AMCG00015412
TU121730 lncRNA upstream 98365 8797071 ~ 9124271 (+) False AMCG00015412
TU121731 lncRNA upstream 98365 8797071 ~ 9124271 (+) False AMCG00015412
TU121732 lncRNA upstream 98365 8797071 ~ 9124271 (+) True AMCG00015412
TU121883 lncRNA downstream 14576 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 97785 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 104379 9327636 ~ 9331026 (+) True G97770
TU121919 lncRNA downstream 122505 9345762 ~ 9347244 (+) True G97777
TU122162 lncRNA downstream 405882 9629139 ~ 9631892 (+) True AMCG00015445
AMCG00015416 mRNA upstream 47153 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015414 mRNA upstream 83187 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015413 mRNA upstream 83711 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015412 mRNA upstream 98627 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015406 mRNA upstream 159160 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015417 mRNA downstream 34925 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015426 mRNA downstream 100298 9323555 ~ 9326614 (+) True AMCG00015426
AMCG00015425 mRNA downstream 125328 9348585 ~ 9355717 (+) True AMCG00015425
AMCG00015428 mRNA downstream 133706 9356963 ~ 9379060 (+) True AMCG00015428
AMCG00015427 mRNA downstream 160417 9383674 ~ 9387025 (+) True AMCG00015427
TU121801 other upstream 189851 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 268961 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 268961 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 268961 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 338683 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 482840 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 533816 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 592461 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 706335 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 862171 10085428 ~ 10086512 (+) False G98093

Expression Profile