RNA id: TU121911


Basic Information

Item Value
RNA id TU121911
length 2889
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G97770
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9327636 ~ 9331026 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttattaatatcacATTGACATCAGTATGTGaactatgttttttgttatttNNNNNNNNNNNNNNNNNNNNNNccccccccccccccacacacacacacacaccccagctGTCAAATATTAACTCAAGCCATAGCAAACACAAACTTTTTAAGCCTACACACATACACCTCTACCGTTACCAAAATAACAGAACACACGCAGAGGGAACCCTACACTTAATTCAGTTgtgtccccccacccctccctgcACGCACAAAAAGGAAATCTGCAAAAGAAATGTAAACTAAGGCCTAGCGAAGAAAGGGACTGGCTTTATTTAATGCAGTCGCTTCACAAAACTCACGgttaacagaaaagaaaaaaaaaaacgcatccGATTCTTACATCAGTGGGTGTTTGCCATTGGGGGGGGGCCTATAATCCAGCTCCTGCGAAGGTtgtctaacaataaattaaaaagaagcaaAGAGCAAGATCCTGATTTACCCGGTTGTGCTCCTATCCACCACCTTTCAGTTCCCAGATGGACACGGGTTGCTTCCTGTCCATTTTATTACCCCCCCTTCGCCGTTCTGGGATCCTAAAGCACAGTGACGCTGGGGACTCACTGGTATGTGTGTTTCAGGGTTTAAAAGCGAAATGGAGGATGTTAgcaacaaccaccacaacacGCATTAACCCAACCGAATaagcatttaagaaaaaacaaagcaaaaggaCGTTGCAGAGCAATCTACTTCAGGCGCGCCTTCATTACGCAGTGGCGGTCTCAGGGCGTCTGTCGCAGTGACCAGGGCTGGAGCCGTCGGCAAGAACAGGCGGTCCTCCCGGGCAAGTGGCAGAAATATAAAACACGAGGAATAAGTATAGAGGGATGGACCCCCCACCCAACAAAAAATGTTATCTTGATCTCAGACATCCAAGATCCACTACCCTCAGCAACGGCACTGAAGAGCATAGTAAATCTAacacgcccacacacacacacacacacgacatcATAAAACTGCCAGGACACGCCCACACACGCTTCAACAGGCAAAACAcacccactcccccccccccataaaacCAACACATTAACTATGTCTGTTTTCAAGATCGCAAACACCCAAAGGGCCAACTTGGGAGGAATGTTCTATTTAATAttagacaacaacaacaacaacagaagtaCAGCAGTTACAGACTTCATTTTTCTAGCAGgactacatttttattattttagaaaccaaaataaccccccacccctcaaaaCATCCTTCTAAACGATCCTACAACACATTCTTGGAAAATATTTCCCCCccgtttggaaaaaaaaaaaaactaaaaatgaaaggaCGAAGGGGTGGTGGGAGGGGCGCGCAGTGGGGTTTCACTCGGATGCTTTGAGGCCTAGTAGCTCAAAAGTGAAGTGTGTCAGAGCAATGCTGGCTAGGTGTCGCTGCTTCCAACTTTCCTGAATGCATCAACgtcctctacacacacacagatgagaCCGAGGACAGTGTAGACCCCACCCTCCATCCACATAACCACATCCCCAACTTCTCTGGATAAGCAGATCATTTCCCACAACCCCCCGCTGCCCTTCATCTGGCTAGCCTCCACTGAATGAGAATGGGGTTCAAATCTATGGCGTCTCAGAGCCGATGCCGTTGCCCGTGTCAGGCCTGGGCACgatttacttattttcctttttaccaAGGCTCCGTTACAGTGCCAAAACAAAAGCCTGTTGCATACCGAAGCAAGGGATCGTGGGTAGAGGAGCAGCCAAGGGGGTTAAAAACCGGAAATCTGACCAGCCATCTTTCTAGTTTGATCCAAAAACTTAAGCGACTGTAAATGGGAGAAAGGAGGGGCAGAATCTCGGTCTTCACTCAGAAAAGCACGTTAAAAAGTAACAATCtacctatatatacacatttataataaaaaaaaaaaaaaaaaaagcattgaaacAAACAGGATGAATACGACCCACGTAATCACTACCAGATTAATAGACATTCAGTGCCATTGCagatttagaaagaaaaataaaataatgcatcctGTGACGATGAGAtgtataaaagaaaatcatCCGGCATCACCGTTGGGTTTGCAGCGCACTGACCCAGAATGCCTGCTGCTGCGGTTCCAGTCACGACAAAAGAGCTGAGGTTTACAGATGCGCTGGAGAGaaaagtagtttattttttgaatactTCGATGTACCGCTTCCtaaccacaaacaaaaaaactgcccGACTAGCAAATAAACCCaaaaaaaccacaacaaaaaagcGACACTAGGAGCCGAAGAAACGGCAGACActtaaattaactgtaaatacaccaacaaataaaaaaaaaaaaaaaaaaggatttgtttACAaagtcagaaaacaaaatactatatatatatattttttttaaattattttctgttacagACTTTTGCTTGTCTTGCGAGAGACTATCGACAACAACCGCCCGTCCAGAACGACCGCTCAGATCCCGGATACAATACAGAAgatgcaaaacaaaagaaaagcaggtCATAACATCTCtcgccttctctctctctttttgctTTTGAAGGACAAACAAGTGTGTCTTATCAGGTTTATTGTACTTTCACTgtcgaaaaaaacaaaaaacaaacacgcatGGGTTTAGGGGCTCAAGCTGACGCGAGCAGATCCCCCGCCATGACGTCTAGTTACGCAGGTTACATTGAGTATTTAAGTAGCTTTTAATAGTCGGCTTCAGTGCAGATGTGGGATTGTTTCTTGGGGGACGGGGGGGGGGTACAGTGGGGGAGTTAGGTGATATTATTCTGCCTTGCGTTTCACTGCGCCAGGGATCTTCTCCTGAACCCTTTGACACTGCATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121863 lncRNA upstream 5952 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 89294 9237833 ~ 9238342 (+) True G97745
TU121878 lncRNA upstream 104379 9222636 ~ 9223257 (+) True G97741
TU121874 lncRNA upstream 107352 9219836 ~ 9220284 (+) True G97737
TU121733 lncRNA upstream 255341 9067943 ~ 9072295 (+) True G97623
TU121919 lncRNA downstream 14736 9345762 ~ 9347244 (+) True G97777
TU122162 lncRNA downstream 298113 9629139 ~ 9631892 (+) True AMCG00015445
TU122181 lncRNA downstream 324442 9655468 ~ 9657866 (+) True G97989
TU122191 lncRNA downstream 371810 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 374698 9705724 ~ 9706036 (+) True G97999
AMCG00015426 mRNA upstream 1022 9323555 ~ 9326614 (+) True AMCG00015426
AMCG00015417 mRNA upstream 65963 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015416 mRNA upstream 152153 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015414 mRNA upstream 188187 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015413 mRNA upstream 188711 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015425 mRNA downstream 17559 9348585 ~ 9355717 (+) True AMCG00015425
AMCG00015428 mRNA downstream 25937 9356963 ~ 9379060 (+) True AMCG00015428
AMCG00015427 mRNA downstream 52648 9383674 ~ 9387025 (+) True AMCG00015427
AMCG00015434 mRNA downstream 68404 9399430 ~ 9401380 (+) True AMCG00015434
AMCG00015433 mRNA downstream 84857 9415883 ~ 9435428 (+) True AMCG00015433
TU121801 other upstream 294851 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 373961 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 373961 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 373961 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 443683 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 375071 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 426047 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 484692 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 598566 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 754402 10085428 ~ 10086512 (+) False G98093

Expression Profile