RNA id: TU122181


Basic Information

Item Value
RNA id TU122181
length 2399
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G97989
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9655468 ~ 9657866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACTGAAATCCCAGTTTATTCCTCAAAGGTAAAAATTCATAAGTCAGCAAGCGCCACCTTGCCTCCACGGTGTCTGTTGAGAGATCTGAACCAGCTGCCTGATATATCTGTGCCTGCCCCAACCTCCAACCTCCATTGTTCACTCCTGGACGCAGTTCCCTTGGGATGCTACTAGAGGGCGCTCTTGGCTTCAGGCCGCTCAAAGTTTCAGAAAACCCAAGTCTATTGCGAACTGTTACAGCGACTGTCTCCTCAGCAGATTTACAGATGTGCAACAGAGTCCAGCTGTCCCAGATTCCTGTGAACCTGGGCTGGGGagcaatgcaaataaaaacaggagaagaaaccaaacaaaacaaagcaaaacaaacaaagtcagTTGAGTGAGTATGTGTCCCAAAGTTTGCAGGGGCTGCTGGGTAGGAATCTCTCAGCGTGACATGGAGCCATGGTGGGAGATTTGAGATCGGATCAATGTTTTGATCCCCACAATTCCTGGGCAGGGAGAGGTGCGGGATGGCACTCCCACAAGGATTGAGGGCTTCCCTGGAGCGCGTTCGTGAAAGATGGGCAAAACTGTTTTTGAGCCATGTGACCGGTTGAAAAAGTGTCTCCGGCTTAATCCACATCGAGAGCGAGTCGCGTTGACAGACATTGCAATGAAAGGAAAGGCAAAACCCACAGgataaacattatatacatacaaacatactcATAGGTAGGTAGATACGTGAAGTGGTCAAGTGAGGGTATTGAAGTGGTTCCTTTGAATTGGCTACATTGGCTCCTCCATCCTGGCCCTTCATCACACAAGACACCCATGTGCTttcagacatacacacacacacacacacacacacacaagagcacattcatatttatatacacagatTCTTAAATTACACACCCAAGGTTCCTCGGTTGAAGCCCCTAaagagcaattttgcaaagttttgaatttaatttcagctcTTAATTGACTGGCATATCCAACTAGTCAACTAtcaaacatttgaaacattaacTAGCAGGACACACGCCTTCCCCGAGGTCTAAGGCAGGATCTGGAAAACCTTGCCTTAAGCCTTACCACACCAGAACTGAGGGGACACTTATATACTGATCCAAGCAGTACACTATACATAAGgtaatcaatatatttaattgttttttgtattcatcaAGCCATTGCTCACCCCCTGAAGTCTCCGCACGGGGGTCTGGGGAGACTTGCCACGGTGAAAGATGGGCAAAAGAGCCAGGAACGTACCTACCACAGTTACAGACATGTCACAGATTCTGACAAGCAGATGTGCACACTGCTTACAGCAAAACAGCGGATTACCTGATGTTTCAGCACCGCTCCCCCCCCCCAGTGTACAGATGTTGGTTAATTAAATCACTCTCCCCCTCTAACTGCGACCTTGGCCCTTCTTCATTACCACCGGGTGTGGAAGTTATGAGACCACTTGCAAAAGCacagcaaaggaaaaacaaaccaaaaacaaaccaaaaaagctATCACAACAAGACATTGCATATGATACAGTCAGCCGGAGATACACGGCTATTGTGAAAGGTGAGCCTTACTGAGCATTGCTGAGGCAGGTGTTTTATACTAAGAAGCAAATGCTGGATTGAATACCAGTGGAATGATAAAGCAGGCCTGTCTGAAGATCTGTGCAAATACTTTGACTACAGAAAACGGAGGGATCGTCCtttttaagaagaagaaaaaaggtcCCCCcaccctgaaaaagaaaaggaataacCGATATCTAAATCCAATCACTCATCATGCACATGATTGCAGTTTTACAGAAGAAacttgcatgtgtgtgagagaggtgTGAGTcaggtgtgtgagtgtttgtgtatgttacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactgagCACCATACCACAGCAGAGAACAGTTTGGATGCCAGAGAGGGGCTGCAAGTGGCTGGGGCTCCACAGTGTAATTCCACAGACAGGAGGGAGCAGTCTGAATGTGAATACGGGAGCTAGCTGAGCAGTCCTGGCTGGCTCTCCCACAGTACAATTCGTTTACGCTCCATCATCGAGGAGAACGAAGAACGGGGTCACACCCGCGAGCTGCCGGTTTTCTCTGCACCCGCCTTGTCCCCCGAGTTCGTGACCCAGCGGTAGCAGTCCGCCACACTCTTGCTGCGTGGCCGCACAGCGCAGCGGGTGCAGTAGACGATGCCCAGCGCCAACATGACCACGACGAAGATGGACAGGGGCACTAACAGGGCCACCAGCAGCCAGTTGTTGTCATGCCTCTGCCTCGACCCGCTCCTTGGGGGCCCCTCGGTGCCCAGGGGGGCGGTCACAATCCACTCCGAGCCAGGGAGGGTGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122162 lncRNA upstream 23576 9629139 ~ 9631892 (+) True AMCG00015445
TU121919 lncRNA upstream 308224 9345762 ~ 9347244 (+) True G97777
TU121911 lncRNA upstream 324442 9327636 ~ 9331026 (+) True G97770
TU121863 lncRNA upstream 333784 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 417126 9237833 ~ 9238342 (+) True G97745
TU122191 lncRNA downstream 44970 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 47858 9705724 ~ 9706036 (+) True G97999
TU122221 lncRNA downstream 101706 9759572 ~ 9760688 (+) True G98025
TU122272 lncRNA downstream 201232 9859098 ~ 9862136 (+) False AMCG00015456
TU122278 lncRNA downstream 220593 9878459 ~ 9879136 (+) True G98060
AMCG00015443 mRNA upstream 11240 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015445 mRNA upstream 25682 9624589 ~ 9629786 (+) False AMCG00015445
AMCG00015444 mRNA upstream 30886 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015435 mRNA upstream 69931 9572868 ~ 9585537 (+) True AMCG00015435
AMCG00015436 mRNA upstream 156489 9473172 ~ 9498979 (+) True AMCG00015436
AMCG00015450 mRNA downstream 39434 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015461 mRNA downstream 114708 9772574 ~ 9810428 (+) True AMCG00015461
AMCG00015455 mRNA downstream 158265 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015457 mRNA downstream 167049 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015456 mRNA downstream 193806 9851672 ~ 9861488 (+) True AMCG00015456
TU121801 other upstream 622683 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 701793 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 701793 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 701793 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 771515 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 48231 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 99207 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 157852 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 271726 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 427562 10085428 ~ 10086512 (+) False G98093

Expression Profile