RNA id: TU122193


Basic Information

Item Value
RNA id TU122193
length 4078
RNA type TUCP
GC content 0.48
exon number 2
gene id G98000
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9706097 ~ 9710729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaccccctcatcTCTGACAATTCCCAGACTGGACACAGATATTAACCatactatatattaatatatgaaaaataattagagTTTtgacctaaaaaataaaaccaaacaagaaaaaaaaagggactCGAGACACAGAGTAAAGAGAAAGACGAGGCATGCtgcccctcactctctctcctctgttagaccccccccccccaccgacTCACCCAGAGAGGCACAGCTCCCCCCTCTCCGTGTCCCAAGTCTACCCCGCCAGAGACTGAATACATAGTCCAGGACAACTCGGTCTCACACAAGGGAGATTTCAATACTAGCCTTTTTTATGCGATTGGttgcattttacaaacaaaccaGCCTGTctcagaaaattaaataaataaatacataaataataaagatatcTAAAGCAGTTCCCACAGCCTGCTTTTTACCATGCACAGGGTGCCTGTAAGCGATGCCCCTAACTCAGATAGCCATGGACGTCTGAGCGACACTGATATAGGACCCTCCCCCTCTCATCTCCTGGCACTAGTAAccgtttaatacattttcatgcattttgcCGGGAGCAAGTGAAACCCGGAATGCTCACAATCAACTTGTGGGAGGGTCTTGGGCTTTGAGTTGacattaattaaactgattatCATTCCATCGTTCATTAAggaacaacaaaatgaaaacaagaaatgtcaCTTTTCTCCAGGACTTAAAACGTGTCGGCCAGTGGAAACCAGCCATCTTATTGCCAGAACACCTTAAAAAATTAATTCTTCAGCAAGGAGAACCAGGGAAAATGATTCGATTGAGCAGCTTACAGGCCAAAAGGAGAATTTGGGGAGTGGCGGGGCTGGGGTTTAAACACTGCGAATAATGGAGTCGGACGCCTGCACCGCATCCGAGAGCGAGGGTGACAATACACACCCCAGCCAAGCACATATGAGCATTTAATTGTGTCGTAAAAACAAACCAGTAGATATTGAAGAAACCGGATACAAAATTGTGAATGTACAGCCGGAACACCGTCAAGAATAGCAGCCAGGGGAGCTCCCCTCTTCGAGTCAGCTTACTCTCCTACTGAAAGGTTCACTACCCCTGCCATCAGAACACAGGCAGTTAAACATGATCCAACCCCAGAAACATATTAGACAGAACCACCCCCTCCTCCAAAAATCCTTGAACTGTAATTACAATGCCAACAATGAACTCGACAGCCACAACTGAGTGAGGATGCCAGGGCCTACTGACGTGAAGTCACACAGGCCTCTCCTTGCATGAAGACCACCTCCATAACCCGCTGGACCCTGGATGGGGGGGAAATCTAGTCTCTGTTCCAAACCAAGCTCTTGAGCATctcaaatcaaaaccaaaactcTTAATggagttactttttttttttcccccatgccCCCCACTGTAAACAAAATCACAGAGAGCAGAGTTTTGAGAAGCACCGACTGGTTCctgaaaacaatcacaaaaatTCCCAGTCAATGCATCTttcttgattttaaattttatttattatcattattatcgtTAGTTTTTCATATTTGCCAACTTTTTCTCAAGACCCAAaggtggaggggaggggaggagaggagagtgtgagagtgagtgtgtgtgtgtgtgtgtgtgtgtaacttcAAACACCAGCCTAGACAACACACCCTCCCACAGTAGCCCTTCAACACAGCCAGCTGGAAGGATGCTGCTCTAACGAACCCTTCATTAGAAGCTGGGGCGGAGGTCCGGGGTGGTTTCGGTCAGAGCCGGTGTTTGGGTCCCCACTACACACAGTGCTGTACACAGTGCCACTGCTCTGGGAGGCTCGCCAAACACGCTGGGGCCGTCTCGGGTACTGGGTTAAATATAACTTTCTTAATTctgggaaatatatatacaagacAGGTTCAGCGACTCCACTGGCACAGACAGTACACCTGcaaacccccccctccccgttTGCTGGCAGTGAGGAAGGAGCACTTACACAGTCAACAGGTTGCAGGCCTCGTATCACACCCGAAGTGCCCCCCCCTCAGCGGTCTCAGTAgtacaaaaacaaggaaacaaacacacacacacacacacacacacacacgcacgcacaacATCAACAAATTACAGATCGACATCCTTCCACggttgtgtgtgtatcagtgcaCCGCAGTGAGGGAGAGCCACAAGTCACCTGGGGTTTTCTGTGGGGGGGAAACCACTGAAACAAGCCTATCAGCCCCCACCTCCCCTATCCCAGAAAACACCCTCAGCCTTGTGGATCCCGTTGTACATTCAGCGACTGACATTCACTTCCTGTCTGGTGTGGTGACATCATCCCCTCAAATCTGACCAATCGCCCGCTGCTCACTGTCACATGCTGGACAAAACCGCAGCCGTCGGTACCCAGTGGATATCCTGAGCCCAGCCCACTCACTTAACGACACGACTGAATTTGCCATTTCACAACACGACAATTGACACCGCCCTCCCACTCTCCGGAAAGGGCCGGTACGGATGTTGTGTATTGTCGGGAACATAAttagcagattttattttccctcgCACTCTCCCCTTTCCTAGTCTTCGAGGTTGTCAGTGGCTCAGTTAAAGGCCGGCACGATTCTTTGATGAAATCCCAGAGGGGGACATTCGGAAAGCttacatttgtgaataatcgAATTCCATTTAAAATGCCGATCGTGAGATGCGGCCCAAATACGACCCCTGGCTGGATTCAGTGACAATCGGGAGTGGGTGAGGTCTCCTAAACgttgagaaaaaaagtttgctCATTGCGttgctttccaaaaaaaaactataaaacctCGAGCCATGTCTGCGACTGAACTTCGAAACAGACACGGTATGAATTGCACTCTGAAGTTAAACTGGGGGCGATGCCAAACCAACGCAATACTGATACAACGCAAACTAGCCAACTGAATATGCACACGCAATCCTGAGGAGCTGTAAGAACTGTTTCaatgaactgtaaaaatgtCCCTGTCCTTGCTTACTTGGGAGACTTCTGGTGGCACTGCGATCAGTTACATGGGCACCCCTCCCCCAACAGGGAGCATCATCTACAACCGCAGACCACTGGATTAACAGATTGTCGTAGGGGCCCtgggaggtcagaggtcacacaCAGCAGACAGGAGGCGAGGACACTGCTGTGTTCCTCCAAATCCAGCCCTCCAGAGCCACAATACTGCTTTTCTTTATCTATgcacttttatacacacatttatgtattcaCTTTACCTCAGCATTCACTGGGGGCCCGAGGGTGGCAGGAGGGGCCGGGCAGCTGTGGGCTCTGGAGGACCGGACGCGAGGATCACCCAATCAGGTCTGCATTCAGGGCATCGATGCCTCGAATCCCTTTAAAACAAAGTCCACCTACAGATATCACTTAAAGGGCAGGCCCGAATGGTCTGCTGCGTTGAAAATGACAAACCAGGCGCGTGGGACGTCTTTTCAATTTCGCTGCGTGTGCTGCTGTCAGGAAGAGGCCAATTGGCTACTGGTGTGGAGAACCTTACATtcctccccccctccaccccccaccgaaaaaaattgcatttgttaaGGCAGGCGGCAGTTTAATTAGTCCGGGAGGTGTGGTCACACGGAGTGAGCGAGGGGCGTCTCCAGTTTAAAATCCCCTCCTGCCACCTTTCAGTTccacaaatgttatttttttctctgtctcgTCTGTACAAACAACCATGCCTGCATCCCCATGCGCCAATCCAtccatttttaactttttttgagGTTGGGGGTCCCTTTGTGTGCTCTCCCTCGAGTGATATCTGTAGACTGGCTGGCACAGGGTTTTATCAAGTCGGTGTGCAGAAAGTTGCGGCCCAAGTGCCAACTTTGTCCCAGTGGAGTCAATTCCACAGctgtcacactttttttttcttccttcactTTGTGTACAAGTACGATCAAAATGCAGACATGTGACGTGGGAGGCAACGGAGAGGCAGAGTCAAGAGGTGCACACAGCCAGCCAACCAACCAACCGTGCAGGCGGTCTAATACGGAATGAAGCAGTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122192 lncRNA upstream 61 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 2988 9702836 ~ 9703109 (+) True G97998
TU122181 lncRNA upstream 48231 9655468 ~ 9657866 (+) True G97989
TU122162 lncRNA upstream 74205 9629139 ~ 9631892 (+) True AMCG00015445
TU121919 lncRNA upstream 358853 9345762 ~ 9347244 (+) True G97777
TU122221 lncRNA downstream 48843 9759572 ~ 9760688 (+) True G98025
TU122272 lncRNA downstream 148369 9859098 ~ 9862136 (+) False AMCG00015456
TU122278 lncRNA downstream 167730 9878459 ~ 9879136 (+) True G98060
TU122320 lncRNA downstream 290485 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 485898 10196627 ~ 10197404 (+) True G98195
AMCG00015450 mRNA upstream 3325 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015443 mRNA upstream 61869 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015445 mRNA upstream 76311 9624589 ~ 9629786 (+) False AMCG00015445
AMCG00015444 mRNA upstream 81515 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015435 mRNA upstream 120560 9572868 ~ 9585537 (+) True AMCG00015435
AMCG00015461 mRNA downstream 61845 9772574 ~ 9810428 (+) True AMCG00015461
AMCG00015455 mRNA downstream 105402 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015457 mRNA downstream 114186 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015456 mRNA downstream 140943 9851672 ~ 9861488 (+) True AMCG00015456
AMCG00015458 mRNA downstream 153019 9863748 ~ 9868818 (+) True AMCG00015458
TU121801 other upstream 673312 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 752422 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 752422 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 752422 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 813081 8828736 ~ 8893016 (+) True AMCG00015397
TU122222 other downstream 46344 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 104989 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 218863 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 374699 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 374699 10085428 ~ 10086512 (+) True G98093

Expression Profile