RNA id: TU122336



Basic Information


Item Value
RNA id TU122336
length 659
RNA type TUCP
GC content 0.46
exon number 2
gene id G98093
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10085428 ~ 10086512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTAAAGGGCCGAAGATAGAAGGCGACATCAAAGCACCGAAACTGGACATTAAAGGGCCAAAGATAGAAGGTGACATCAAAGCACCGAAACTGGACATTAAAGCTCCAGATGTGAAACTAGAGGGTCCAGATGTTGACATTGAGGGTCCAGAAGGTGGATTCAAGATGCCCAAAATCAAAATGCCATCATTTGGCTTCAAAGGTCCTAAAGTGGAGGGTCCTGATGTTGACGTGAATCTGCCCAGAGCTGACATTGACATCAAAGGGCCAAAGATAGAAGGGGACATCAAAGCACCGAAAGTTGACATTAAAGGGCCGAAGATAGAAGGCGACATCAGAGCACCAAAAGTTGACATTAAAGCTCCAGATGTGAAACTAGAAGGTCCAGATGTTGACATTGAGGGGCCAGAAGGTGGATTCAAGATGCCCAAAATCAAAATGCCATCATTTGGCTTAAAAGGTCCTAAAATGGAGGGACCTGATGTTGATGTGAATCTGCCCAGAGCTGACATTGACATCAAAGGGCCGAAGATAGCAGGTGACATCAAAGCACCGAAAGTTGACATCAAAGCACCAGATGTGAAACTAGAGGGTCCAGATCTTGATATTGAGGGGCCAGAGGGGAAGATCAAAGGCCCCAAATTCAAGATGCCATCTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122320 lncRNA upstream 72540 10001214 ~ 10012888 (+) False AMCG00015475
TU122278 lncRNA upstream 206292 9878459 ~ 9879136 (+) True G98060
TU122272 lncRNA upstream 223292 9859098 ~ 9862136 (+) False AMCG00015456
TU122221 lncRNA upstream 324740 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 379392 9705724 ~ 9706036 (+) True G97999
TU122474 lncRNA downstream 110115 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 132042 10218554 ~ 10222496 (+) True AMCG00015492
TU122548 lncRNA downstream 236746 10323258 ~ 10323970 (+) True G98255
TU122533 lncRNA downstream 252596 10339108 ~ 10340845 (+) True G98244
TU122580 lncRNA downstream 278870 10365382 ~ 10365647 (+) True G98277
AMCG00015484 mRNA upstream 2342 10082004 ~ 10083086 (+) True AMCG00015484
AMCG00015473 mRNA upstream 57859 10016456 ~ 10027569 (+) True AMCG00015473
AMCG00015476 mRNA upstream 69722 10013066 ~ 10015706 (+) True AMCG00015476
AMCG00015475 mRNA upstream 72567 10006603 ~ 10012861 (+) True AMCG00015475
AMCG00015474 mRNA upstream 89270 9988652 ~ 9996158 (+) True AMCG00015474
AMCG00015483 mRNA downstream 8577 10095089 ~ 10099174 (+) True AMCG00015483
AMCG00015480 mRNA downstream 72316 10158828 ~ 10161768 (+) True AMCG00015480
AMCG00015481 mRNA downstream 81115 10167627 ~ 10176121 (+) True AMCG00015481
AMCG00015482 mRNA downstream 93312 10179824 ~ 10188538 (+) True AMCG00015482
AMCG00015489 mRNA downstream 107195 10193707 ~ 10195872 (+) True AMCG00015489
TU122294 other upstream 154624 9929592 ~ 9930804 (+) False AMCG00015464
TU122266 other upstream 213423 9815718 ~ 9872005 (+) True G98053
TU122222 other upstream 326998 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 374699 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 1052643 9029717 ~ 9032785 (+) False AMCG00015407
TU122488 other downstream 126489 10213001 ~ 10217201 (+) False AMCG00015492
TU122544 other downstream 230396 10316908 ~ 10317325 (+) True G98251
TU122613 other downstream 361654 10448166 ~ 10450663 (+) True G98302
TU122743 other downstream 649467 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 978206 11064718 ~ 11066855 (+) False AMCG00015539

Expression Profile