RNA id: TU122544


Basic Information

Item Value
RNA id TU122544
length 325
RNA type TUCP
GC content 0.57
exon number 2
gene id G98251
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10316908 ~ 10317325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATCATAGATCGCAAATCCGATCGTCTCCATGTCCTTCCCCTCCTTTCGTTGCTTGCGGCGGTCCTTCTGCATGAGAGCCACCAGGAAGCTGCAACCTGGGTCTTCATCAGAGTCGGAGTGCTTCAGGGCCACCTTGAACTGGGGGTTAATCCAAAATGTTGCTGGGGAATTCCTGCAGCCCCCGGCCGTGCTGCCCCGCCGCCACTCCCCTGTGTACAGCGCCGTGTTCCACTTCCTGATGTTGGGACACTTGAGCGTGTCAGGggtcaggttgcagatctccagCCTTGTGAACTCCTGCAGGAAATCACTGAAGGACAtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122489 lncRNA upstream 94412 10218554 ~ 10222496 (+) True AMCG00015492
TU122474 lncRNA upstream 119504 10196627 ~ 10197404 (+) True G98195
TU122320 lncRNA upstream 304020 10001214 ~ 10012888 (+) False AMCG00015475
TU122278 lncRNA upstream 437772 9878459 ~ 9879136 (+) True G98060
TU122272 lncRNA upstream 454772 9859098 ~ 9862136 (+) False AMCG00015456
TU122548 lncRNA downstream 5933 10323258 ~ 10323970 (+) True G98255
TU122533 lncRNA downstream 21783 10339108 ~ 10340845 (+) True G98244
TU122580 lncRNA downstream 48057 10365382 ~ 10365647 (+) True G98277
TU122586 lncRNA downstream 61282 10378607 ~ 10379031 (+) True G98282
TU122603 lncRNA downstream 94562 10411887 ~ 10418700 (+) True AMCG00015504
AMCG00015498 mRNA upstream 11136 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015491 mRNA upstream 27518 10277440 ~ 10289390 (+) True AMCG00015491
AMCG00015488 mRNA upstream 52449 10264022 ~ 10264459 (+) True AMCG00015488
AMCG00015490 mRNA upstream 88072 10228051 ~ 10228836 (+) True AMCG00015490
AMCG00015492 mRNA upstream 97756 10213878 ~ 10219152 (+) False AMCG00015492
AMCG00015503 mRNA downstream 72968 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015504 mRNA downstream 96001 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015502 mRNA downstream 118526 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015505 mRNA downstream 167617 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015512 mRNA downstream 195310 10512635 ~ 10517039 (+) True AMCG00015512
TU122488 other upstream 99707 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 230396 10085428 ~ 10086512 (+) False G98093
TU122336 other upstream 230396 10085428 ~ 10086512 (+) True G98093
TU122294 other upstream 386104 9929592 ~ 9930804 (+) False AMCG00015464
TU122266 other upstream 444903 9815718 ~ 9872005 (+) True G98053
TU122613 other downstream 130841 10448166 ~ 10450663 (+) True G98302
TU122743 other downstream 418654 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 747393 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 1040827 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 2143259 12460584 ~ 12462665 (+) False AMCG00015555

Expression Profile