RNA id: TU122580


Basic Information

Item Value
RNA id TU122580
length 266
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G98277
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10365382 ~ 10365647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagaagCAGTGAGATCAGAAGAGGAGCGAGACAAGGAAGGCGAGACTGTTTGCTCaggagagagtgaaggagagtCAAAGGTCAAGAGTAGCCAGGGCTCCCAGAATTCAGTGGGGAACGAGGAGCTGGGAGACTCTACAGAGCAATCTGCCCAGTCTCTAGAGGAGCAGGAATCTGACCAAGGGGACGAACCAAGGGGCAAAAGAGGAGAGGCCAAGacaaaaagagagggagggcagGAGGTGGGAGATGAGCCGACTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122533 lncRNA upstream 24537 10339108 ~ 10340845 (+) True G98244
TU122548 lncRNA upstream 41412 10323258 ~ 10323970 (+) True G98255
TU122489 lncRNA upstream 142886 10218554 ~ 10222496 (+) True AMCG00015492
TU122474 lncRNA upstream 167978 10196627 ~ 10197404 (+) True G98195
TU122320 lncRNA upstream 352494 10001214 ~ 10012888 (+) False AMCG00015475
TU122586 lncRNA downstream 12960 10378607 ~ 10379031 (+) True G98282
TU122603 lncRNA downstream 46240 10411887 ~ 10418700 (+) True AMCG00015504
TU122608 lncRNA downstream 62938 10428585 ~ 10432044 (+) True G98299
TU122622 lncRNA downstream 124261 10489908 ~ 10493701 (+) True G98310
TU122623 lncRNA downstream 128877 10494524 ~ 10494951 (+) True G98311
AMCG00015498 mRNA upstream 59610 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015491 mRNA upstream 75992 10277440 ~ 10289390 (+) True AMCG00015491
AMCG00015488 mRNA upstream 100923 10264022 ~ 10264459 (+) True AMCG00015488
AMCG00015490 mRNA upstream 136546 10228051 ~ 10228836 (+) True AMCG00015490
AMCG00015492 mRNA upstream 146230 10213878 ~ 10219152 (+) False AMCG00015492
AMCG00015503 mRNA downstream 24646 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015504 mRNA downstream 47679 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015502 mRNA downstream 70204 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015505 mRNA downstream 119295 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015512 mRNA downstream 146988 10512635 ~ 10517039 (+) True AMCG00015512
TU122544 other upstream 48057 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 148181 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 278870 10085428 ~ 10086512 (+) False G98093
TU122336 other upstream 278870 10085428 ~ 10086512 (+) True G98093
TU122294 other upstream 434578 9929592 ~ 9930804 (+) False AMCG00015464
TU122613 other downstream 82519 10448166 ~ 10450663 (+) True G98302
TU122743 other downstream 370332 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 699071 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 992505 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 2094937 12460584 ~ 12462665 (+) False AMCG00015555

Expression Profile