RNA id: TU122613


Basic Information

Item Value
RNA id TU122613
length 2465
RNA type TUCP
GC content 0.49
exon number 2
gene id G98302
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10448166 ~ 10450663 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gactcaaaaaaacaaaaaaaacatttataatgtaCAACATGATTGGGAGAGGAGAGTTCTATACAGGTGGTTGAGTTTTTCtctgcattatatatatttctgcataCTAAAATGATACAACCTATTCATTTAAGATAAGGCAGTAGTAACAGTGAAATATTGCTACAATGAAacggttttaaaaataaaaaaaattgcatttgagGACAGACTAGGCCAAGGCTTTTTGAGTAATGTGTGACTATAACCGGGTTACACCGATTTCTCCAGCACAGATCCGTTAAGAAGCAAGAAATGCGATTCCGTTTCAGGGAGAGTCAAGGGTTGGGGCGGCGGGGACAGGAAACCGTCCAAAGCAGGCCGCCTTCACAATCAAAAGCTGTATTCGGATCCAGCACCCTTGAGAAACCCCATCTCGAACTGGGTCCCACAGCAAGGCCACACAGTGGAGTGCGTATCACTCTGtgcaccccccaaccccacgTGCTCTCCTTAAGGTCCTGGACAGAAAGCGCAACAGGCTGTGTGTGCATACAATACAGTGGAGCTGCAGAATTGATCCCCTTTGTGGggcaaaagaaaaccacaatgaCAACTCATAGCTCCCTACCAGGCACtatggggtggggtggggtggggtggggggtgaccCCATCTTGGATGCAGGGGAGCTCGTGTGGTCTGTACACCGCTTAGCCCCGCTGCGGTCTCGGTTAGTGAAGCTCCACtcatactgtatttacagaaatacatacagacacacactctcgcCCCTCCAgcagtaaagaagaaaaaacacagaaaattaGTGCTCTCTTTCCTTTGCAGTAACAAGGCAGTGCAGTAATGGCATCGATACGTCCCACGCCCCCTTCTATAAGGAAAGAACCTCACCCCACCTATGTAACCCTAAACCATAGGTGCCGTCCTGTTTCAGGCACCACTGTACACCTCACCGGCTTTatgttatttgcatttcattgctGTCCATTTCCAAGGCTACGGCATTTCTCAAGGCACTTGTTCCCTCCCTTCCATATTCTGTTTTCTGGCAGCATTCTCTTCCCAGACGCCTCCAACAAGGAGATCAGTAAACCAGGATTttctactactattattattgtatgacTTCAGCTGGCATTACAGATTTTATTCCTACATGGTATTAACCTAGTGGATGTCCAATCAGTGAGTGAAGCACTGAGTTTATAcaggatagatagatagatagatagatagatagatagatagatagactaAGACTTAGTTGATGGACTAAGCTGTACTTCAGGAGCAGGCCTGCATGAAGTCACATTTTCCTCAGACTGGCACTGGGGGGAATGGGTTCGGTCCGAATGCCGCTTCCCGATTATTCGCTACAGTCACTTGAAGTCAGTTTTGCGCTCATTTTTTGGTTCCCTGATCAACATCCTTAAACataatttcatatattttattattataattactatgaTTACCACGATCCTCATCAACCGTATGCGGGACCCTGTCCTGGATGAACCGAAAACAGTCTAAAGAACAGTCATAGAACAGAGTGTTTCGAGTTGTCTTGAGAACAACAGGAAGGAAAATGGCAACATCACTAATGCAACCGATGAGACGCAAGGGAGAAAAAACCCTCAGCTTTTCAAAGCAGACCCAGTTAACTGTTCTTCAGCAGTGAGCAAGCactgttaataatattaattagtaTTAGCGCTTGGCTTTTAAGGTCTGCAAACAATGAAAAGGTCTAATTAAGTTAGAACTCCAATAAGGACTCCACAGGTGACTGATCGCTCCAATGCACTGATTTCAATGGACTGTTTGCACCAAACCAAGCCCTCACCGTCTATTTCCTTGTCCTGtccaccccccacaccccctacACCTCCTGCAAGACCTGGATAATGCCTTCAAATCACCCCTGAAATACCCGTGAACTCAGAGCTGCATCCAAcgagagaaaacacaaaaagcgaATTCCGAAAAGCTGCCCAGCCCAGCGGTCAGTGACGGGGGGAGGGGGATCAGCCGGGGTTGTGGGACAGGAAGTTGTGGGAGCTGCCGCTGAAGATGGACATGAGGCGGTCGTCGTCCAGGGAGTTGAGCTCGTCGGTGTCGTCCAGCGTGGGGGCCATGGCCTGCTGATGATGGGTGCCGCTGTCCAGCAGGCCCTCGCTCTGCAGGAGACTCATGATGCTGTTGGGGTAGTTCATCCAGGTGTTGGGGTTGGAGATCTGCCCGGCCGCGGGGTCCTGGCCTTGGGAGCCGCCCGTGCCCTCCGGCACCGCAACGCAGTTCTGCCCCAGCAGCTCCTGGAACTCCTCTGTGTCGATGCAGTCCAGGGTGACCGAGGGCTGGGCCTCCGAGAAGCTGGGGAATTCTGGGATGTCGTCGTCTTCATGACCGCTGAAGAGGGGCTTCAGTGGGGCCGACGTGTCCATCATGACCCCCCCCATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122608 lncRNA upstream 16122 10428585 ~ 10432044 (+) True G98299
TU122603 lncRNA upstream 29466 10411887 ~ 10418700 (+) True AMCG00015504
TU122586 lncRNA upstream 69135 10378607 ~ 10379031 (+) True G98282
TU122580 lncRNA upstream 82519 10365382 ~ 10365647 (+) True G98277
TU122533 lncRNA upstream 107321 10339108 ~ 10340845 (+) True G98244
TU122622 lncRNA downstream 39245 10489908 ~ 10493701 (+) True G98310
TU122623 lncRNA downstream 43861 10494524 ~ 10494951 (+) True G98311
TU122624 lncRNA downstream 46173 10496836 ~ 10497062 (+) True G98312
TU122657 lncRNA downstream 79297 10529960 ~ 10540813 (+) False G98338
TU122658 lncRNA downstream 79297 10529960 ~ 10571890 (+) True G98338
AMCG00015502 mRNA upstream 4539 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015504 mRNA upstream 30714 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015503 mRNA upstream 53536 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015498 mRNA upstream 142394 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015491 mRNA upstream 158776 10277440 ~ 10289390 (+) True AMCG00015491
AMCG00015505 mRNA downstream 34279 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015512 mRNA downstream 61972 10512635 ~ 10517039 (+) True AMCG00015512
AMCG00015509 mRNA downstream 89257 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015511 mRNA downstream 92599 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015510 mRNA downstream 97113 10547776 ~ 10553456 (+) True AMCG00015510
TU122544 other upstream 130841 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 230965 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 361654 10085428 ~ 10086512 (+) False G98093
TU122336 other upstream 361654 10085428 ~ 10086512 (+) True G98093
TU122294 other upstream 517362 9929592 ~ 9930804 (+) False AMCG00015464
TU122743 other downstream 285316 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 614055 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 907489 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 2009921 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2524976 12975639 ~ 13046813 (+) True G98759

Expression Profile