RNA id: TU122624


Basic Information

Item Value
RNA id TU122624
length 227
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G98312
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10496836 ~ 10497062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGGTACAGGAAGGAGTTGAGGAACGTGAAGAGGAGCAGGGGCAGCTGGGAGAGCAGGGTCATCCAGTTGTTGAAGTAGTACTCCTTTTGGACCGGCGCAGTGCCGTTCAGCAGCTCGGACACGTTCACGTTCACCGGGGCCTGGAGCCGCCGCTGGAAatactgagagggagagagagggagggcagtGAGAGAGAAGCTgagggaagtgtgtgtgtgggggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122623 lncRNA upstream 1885 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 3135 10489908 ~ 10493701 (+) True G98310
TU122608 lncRNA upstream 64792 10428585 ~ 10432044 (+) True G98299
TU122603 lncRNA upstream 78136 10411887 ~ 10418700 (+) True AMCG00015504
TU122586 lncRNA upstream 117805 10378607 ~ 10379031 (+) True G98282
TU122657 lncRNA downstream 32898 10529960 ~ 10540813 (+) False G98338
TU122658 lncRNA downstream 32898 10529960 ~ 10571890 (+) True G98338
TU122739 lncRNA downstream 211359 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 322686 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 396111 10893173 ~ 11227821 (+) False AMCG00015528
AMCG00015505 mRNA upstream 7519 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015502 mRNA upstream 53209 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015504 mRNA upstream 79384 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015503 mRNA upstream 102206 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015498 mRNA upstream 191064 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015512 mRNA downstream 15573 10512635 ~ 10517039 (+) True AMCG00015512
AMCG00015509 mRNA downstream 42858 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015511 mRNA downstream 46200 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015510 mRNA downstream 50714 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015513 mRNA downstream 57604 10554666 ~ 10555449 (+) True AMCG00015513
TU122613 other upstream 46173 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 179511 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 279635 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 410324 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 238917 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 567656 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 861090 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1963522 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2478577 12975639 ~ 13046813 (+) True G98759

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU87584 False 324 lncRNA 0.43 2 NC_056705.1 39908463 ~ 39908858 (-)