RNA id: TU122658



Basic Information


Item Value
RNA id TU122658
length 540
lncRNA type read_through
GC content 0.43
exon number 2
gene id G98338
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10529960 ~ 10571890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGCAATATTGGCAATAGCAGAAGCAGTCCTAACATTTTTTCAGCTCTGAACTGAATGGCcatgaatataattataataaaaagaccAAGACCAAGAGACCTGGCAACAGCAGGGCTCTGGGTTTAGGTGTGTGATCGTCTTCAATGACCCAGCGGTTTAAAGCTCTCCAGCATGTCAGCAAACGTGTACTTTATTCAgtgcttatatatatttacacacaaggTCTCCTACAGTCCACGGTACAGCTTacaaacagatacaaataaatacattacatgatAAAACAATCTTACAGGGTGatcttttacaaaaatgtatctaaCCATTTCAGCGCCTCCTAAACTGAGCACAATCGGCACACACCTCATCACTGATTCACTAGAAGCGCCGGTACGTATGTGACTCAATCGGTACCATTCGATACCACATTCGATACGTCCCTCTCCGTGTGCAGCAATGGAATCATGAAGtccagtcagtgtcagtcactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122624 lncRNA upstream 32898 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 35009 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 36259 10489908 ~ 10493701 (+) True G98310
TU122608 lncRNA upstream 97916 10428585 ~ 10432044 (+) True G98299
TU122603 lncRNA upstream 111260 10411887 ~ 10418700 (+) True AMCG00015504
TU122739 lncRNA downstream 136531 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 247858 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 321283 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 352242 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 416966 10988856 ~ 11019109 (+) True G98442
AMCG00015512 mRNA upstream 12921 10512635 ~ 10517039 (+) True AMCG00015512
AMCG00015505 mRNA upstream 40643 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015502 mRNA upstream 86333 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015504 mRNA upstream 112508 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015503 mRNA upstream 135330 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015516 mRNA downstream 41518 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015522 mRNA downstream 163469 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015521 mRNA downstream 167580 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015520 mRNA downstream 197494 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015528 mRNA downstream 300780 10872670 ~ 10896165 (+) True AMCG00015528
TU122613 other upstream 79297 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 212635 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 312759 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 443448 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 164089 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 492828 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 786262 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1888694 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2403749 12975639 ~ 13046813 (+) True G98759

Expression Profile