RNA id: TU122777


Basic Information

Item Value
RNA id TU122777
length 423
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G98422
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10819748 ~ 10820170 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGTCCAGCACCTCCTCGTCCTCGCATTTCACGTCAAAGGTCTTCAGCTCCGTCTGAATCGCCTCAGTGGTGTCCGCCGCCATCGCCGCGTCCCTGGGGGTGAGGGGGGACCGTGGGGGAGATCCGGGGCAGCCTCGCCGGTCCGCTTCCTGGAGTCGCCTGAACCCGCAGCAAAGACGACCGTCGCTTTGTGACTCTTCTACCGCCTGTTGCACGGCCAGCGGGGGCTGTGAATTATGCGATGTAGCTTCTGCGACAGGGAGAATTATTGTTAccgttataattataatacttattattatatacGATTGTTTTCGGATTATTCTCCCGTGCTGCCTGTCAGTCTTTTCCCATTTGCCGCGAAAACAGAGGAGCCCCGCCTCCTGCGTCACGCTACGTCCCCGCCTGCGCAACCAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122739 lncRNA upstream 110995 10708421 ~ 10708753 (+) True G98398
TU122658 lncRNA upstream 247858 10529960 ~ 10571890 (+) True G98338
TU122657 lncRNA upstream 278935 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 322686 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 324797 10494524 ~ 10494951 (+) True G98311
TU122785 lncRNA downstream 73003 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 103962 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 168686 10988856 ~ 11019109 (+) True G98442
TU122926 lncRNA downstream 541863 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 541863 11362033 ~ 11416599 (+) False AMCG00015544
AMCG00015520 mRNA upstream 47184 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015521 mRNA upstream 77343 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015522 mRNA upstream 82773 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015516 mRNA upstream 193684 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015517 mRNA upstream 215686 10567509 ~ 10604062 (+) True AMCG00015517
AMCG00015528 mRNA downstream 52500 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015529 mRNA downstream 91280 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015539 mRNA downstream 239320 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015537 mRNA downstream 347117 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015538 mRNA downstream 517176 11337346 ~ 11342116 (+) True AMCG00015538
TU122743 other upstream 78615 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 369085 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 502423 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 602547 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 733236 10085428 ~ 10086512 (+) False G98093
TU122817 other downstream 244548 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 537982 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1640414 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2155469 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2603710 13423880 ~ 13429300 (+) True G98878

Expression Profile