RNA id: TU122795


Basic Information

Item Value
RNA id TU122795
length 1771
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G98430
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10924132 ~ 10938566 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttatgttgttttattcgTTTTTTATTCCAAGAaggtgtttttcctttttccttttttgtttaaggCTCTCATATTCTCACAATGGGAGCacagtcTGGATGATGACCAGGTCCCCCCAtggcccccacccccccactctgtTCCTAGGTAGACTGCAGTCAGTGTGGCGGGCTGGCTCAGTGTGAATGCCTGTGATCAAGTCCCCTGTTCTACCTCAATAGGAGCTGTTTCCACTGCCCAGGCCTATCCAAGCCTGACTCTGGGTGACTTCAGAGAGATCGCTTGCCTTTCTAAAGTCTAGCCCAATTCTGCAACGTTTATcgattaatataataatttcccCTGTATGGAAATATATTCCTCAGAGAGTTCCCTTCCTGGCTTCTCCGCTGTCCACTGGGCATTTGATTTGATGTAAAAGGCAGTCTTGTTTAGCGGCTCCAGCCCCATGGGGACACACACCACGGAGCCTGCAGTGGCCCAACACTGGACTGTGCCGAATAGGGTGTGGAAGGAGGGGGACGGCTGGGCAGTGTAATGGCAGCTCCAGGACTCCAATGCCCCGGACATATTCTCATATGAAACTTCCTCTGTGGGGCCAGCTCACTTCCTGACGCTTTCAAACCACTCCCCCCTACCCCACCCTACTATACCCCACCCCTCCCCTGCCCCGCCCCATAACCATGGCTACCACACGCTCATCTCAGTGTCACACCTGCTTAGCCACAAACAAgaatagaagaaaatatatgaTAATCAGAGCTTCAGATCTGAtttcccttatttatttatttgattcggtttttttttaaattattgattatGTTCTTCTGTTGTCAACAGCTTCCTGACTACTGTTAAGACATACGTGACAGATCACAGTACCTCTGCTAGGGGGACTTTATCACAGGCCTAAAGAAGGTGGACAATGGTGCAGTAGCGTGAGGAGAAGTGACCATCGATAgcttttctaaaacaaacactgcatgCATCTGCAAAAAAGTAATCAGCCAATATTAGGTAAGGTACTttgcctttttctctttcagagatttatttattttgatttgctttctTGCCCCGAAAACCCCAGGGAGAGGGAGGGTTTGCTCAGCATATACTGATAGGATAACAGAGGTGAAAACGAacacaaaccaataaataaatagataaataaaaaaggtataGGGGACTAGAAATTGAGACGTCATTAAAGCCTTGTTACCACAATTGCTGAACGTGAAATCCGAGCCTGTACTGTTGGGTGGAAGATGTCAATGGGAGAAGggatttaagaaagaaaatgacagattTCACATAGGGGATCCCTGCCAGGGTGATTACAGTGACATCAGGGGTACATCAGCCTTTCCGATGGTAATCTGCTAATGGCATGtgcaaattgtgtgtgtgtgtgtgtgtgcgcgtgtgcgcatgtgtgtgtgtgtgtggaggagtcTGAGCAAAGCCTTCCTATCTCTGTGTATCTCAGAGCCAGGATGGGATGGGTGGGGGAGTGGgaggggggggctgggggaTGAGAGTAGAGGACAAGGGACGAGGTGGGGGAtgagggaggggggggcggggtTGTGGGTGTGCTTTACAAGTCGCTCTCCCCATACAGGGCGCTGGAGAAGGAGATGTAGTCCAGGGCTCCGGGCGCCGCGTCCGAGCCGATGTACTTGGTCATGCGGCTGATGCAGTACTCTGCCTGCTCTGGGGGCAGCTCCCGCCGCAGCTCGTCCACTggatggggagagcga

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122777 lncRNA upstream 103962 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 215379 10708421 ~ 10708753 (+) True G98398
TU122658 lncRNA upstream 352242 10529960 ~ 10571890 (+) True G98338
TU122657 lncRNA upstream 383319 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 427070 10496836 ~ 10497062 (+) True G98312
TU122811 lncRNA downstream 50290 10988856 ~ 11019109 (+) True G98442
TU122926 lncRNA downstream 423467 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 423467 11362033 ~ 11416599 (+) False AMCG00015544
TU122970 lncRNA downstream 528286 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 608999 11547565 ~ 11547819 (+) True G98590
AMCG00015529 mRNA upstream 1602 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015528 mRNA upstream 27967 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015520 mRNA upstream 151568 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015521 mRNA upstream 181727 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015522 mRNA upstream 187157 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015539 mRNA downstream 120924 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015537 mRNA downstream 228721 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015538 mRNA downstream 398780 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015546 mRNA downstream 413405 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015547 mRNA downstream 415505 11354071 ~ 11356899 (+) True AMCG00015547
TU122743 other upstream 182999 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 473469 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 606807 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 706931 10213001 ~ 10217201 (+) False AMCG00015492
TU122336 other upstream 837620 10085428 ~ 10086512 (+) True G98093
TU122817 other downstream 126152 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 419586 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1522018 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2037073 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2485314 13423880 ~ 13429300 (+) True G98878

Expression Profile