RNA id: TU122938


Basic Information

Item Value
RNA id TU122938
length 2703
RNA type TUCP
GC content 0.46
exon number 2
gene id G98543
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11353783 ~ 11386199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTCTTACCGTGGTCCAATCAGGAGGCCCACGAAGTTGATCTCTGGATACTCATCCTGAGGAATCATTACCTTGTCGCTAACCCGGGTGGCCGGGGGCCTACAGGGGAGGGAAGCGGGTTATTAACACATCCAGTCATAAATAAAACCTCCTCTGGGATTACTCCGTACTAGAAAGCATCCTTTTCAGTTCAACGTAGCAGATGTAACACTTTACATCCACATGGACCATTACAACTCAAAACCAGTGAGCCATGCTATGGgctaaagtaaaataattcatGATGTTAGACAAATCCAGTACTTTGAACAAATGTCAGATGAGTAAATAAAACCTAATCAAAACCTTTTCCACAGTCAAACACTCAACTCAACTCAGAAACAAAGACCATCAACACTGCAATTCACACATCCTCCCTACTTGTAGTCTGCTGGAGGCTTGAACTCTGGGTTGAGCCCCACCATCTCCTGGATGAGCGTGTGCCGCTCCTCCTCCAGCTTCTTGCGTGTGCGGTACTCGCGCGTGTTCAGCCGCTTACCCTCGCTGTTATAGATCGGCTCCGGAGAGGGAGACCTGTAGAAGACAAGGGagcaggtgggggggcaggggaggtAAAGCAGAAAGACGAGTGGCTATTAAGATCTCTCTTTCgaggaggagagggaagaaaacacagaaaaacaacgtCCCTATGACTGGCTAGCCTAGAATTGAAAATTAAGCTTCCacaacaaaatacttttcactCAAACTCCAGAGAACAGGGAAGAAAACCTGTTTACCAACTCATCTCGGAGCGgtgaatggaaacaaaaaaaaattaccataAGTTGAGACCATTAAACAGAAGTGAAGTGCAAGCATTTACATTCCCCTTTAGCAGGCGAGATATGGAAGTCTTCTCCACCATATAGCACATGCCTGTGGGAATGGTTTATGGACTACAAGTTGGACACAAATGAAGGACACGTATCAAGcttagaaatattaaaatcaggGGGGCATCTACAGGACTTTGGAGCCATTGCAGGTATGAAATTTGAATATCAAACAGGATTGTCCCTCTGCCAATTCAGTTTCTACTTACTCTTATTTCCAGCCCCCAGCACAGCTACTAAAATGCCAGTGTCCAAACCTAGGACTATCATCCTTCCAAAGCCCCGATAACTTTGGGAATCAGCGGCTGCATCAGGCTGAAAATCCCCCTCTACAGATCCCGTACTGACAGCTGGGTGGGGAGCAGCAAAAGAGAGGGGGAATGGGGGGGTAGCTTATGCCTGAGCTCAGACCCCAGACCCATGTTCTGTTTCAGATGTTAAGCACTAACCCAACCAATGACGTACAGGATACCATGATGCATCGAGAGGAATCATAGTAATTTAAAGcgtttaaattaaaacaaaacaaaaaaaggttaatcCTAAAGGGGAAAATAAGCCAGGTAGGAAGGTTGTCGTATTTTAGTTAAGAATAGGATGTGTAAAAGCCAGATGGGTTAAAAACACCAGGCTCCTACTCCAATCTTGACTGCTGAACCTTGTGTCTCACACGTTTCGCTGTGTAAAAGGCTCTGCGCTTGAAAAAGGTTAGAGTGGGGGAATTTGGTTAGagagaaaaaagttatttttttctttgtctgtaattttttttttttttttttttNttttttttttttttttttttttttttttacacacccCCTGTCCCCCCTTTAAGAGAATGTTTTAAAGAGGTGAACATCTATTTTCTCAAGGAATCTAGcatccgtttttttttttaggctcAGGGCCTACTTAAGTCTCACTGCTCAAATGATCAAGAGAAGTAGTTAAAGGTACAATTCGGAGCAGGACATTTTGGGTGTTTCAGTAGTGTTTTGCAACTCTGGCTCCAAGAAGGTGCAACGGCTAGCATAGATTACTGGTTCATACAATTTCTCATGCTACCTCAGACGGAAACTTTCGTTTGTTGGTGACAATTTGCAAGAGagaacatacaaacataaagCGCTCTCCTACTACAAGGCGAAACCCAGCTGCTGTAAACATCGAAAGCTtacaaaaacaaccaaccatTAGCTTGACTGATCCCAAGTTTGGcttctattttaaattatttacactgCTGCCTCTAACTTAGCACTTCCAAATGAGGTTGATTTTAACTATGGCATTTATTCTTATAACATTCCCATGAATCAACAGGAATGTTTTAGAACCTATCAGAGACACGGTAACTAACTCACTTGGTTTTGCCTCGGACGGAAAAGTATTCCAAACAGAGGAAGTTTAAACAGCTGGCCAGGCCATCGCCCAGAGCTTGGCAGCTTCCCGGTCTATCCATGAGACAAGCTAGCGGGAAGATCCAAGAGCAAACCGCCCATCCACCCACCCACAATACCCAATCGAACAGCATTCTCCTGCTGGCCTATGCTCACCTTGTCTGGACACATGTGCACGTACGGTTAGTAAGCGTAGCGTTGCGGCATTGGCTGCACCCGTTCAGCGTAGGGGTCTCTGGGCCGGGGCAGGCTGTACGCGGTGCTTCTGGGGACGGACGACACAGGAGAGAGACGGGAGCGCTCGTACGCGTAGCCGTTCCCCACGGGGGGCGCCGAGCCCTGGGGCGCTCGGCGGATGGGGCTGCGGTCTCGGCCGTAGAAGGAGGAGCTCGGGCCGGGCATGTGGGGCAGCGGGCGCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122914 lncRNA downstream 18936 11332663 ~ 11334847 (-) True AMCG00015540
TU122894 lncRNA downstream 203919 11143518 ~ 11149864 (-) True G98510
TU122857 lncRNA downstream 504525 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 645031 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 649388 10667889 ~ 10704395 (-) False AMCG00015519
TU122994 lncRNA upstream 161436 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 1013534 12399733 ~ 12405371 (-) True AMCG00015557
TU123059 lncRNA upstream 1059799 12445998 ~ 12446953 (-) True G98648
TU123060 lncRNA upstream 1061389 12447588 ~ 12447829 (-) True G98649
TU123061 lncRNA upstream 1063097 12449296 ~ 12449821 (-) True G98650
AMCG00015540 mRNA downstream 8293 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015541 mRNA downstream 31283 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015535 mRNA downstream 93188 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015536 mRNA downstream 169893 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015532 mRNA downstream 329170 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015557 mRNA upstream 1018988 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015556 mRNA upstream 1076857 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 1095523 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015562 mRNA upstream 1187264 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 1237059 12623258 ~ 12640668 (-) True AMCG00015561
TU122907 other downstream 92615 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 92615 11257278 ~ 11261168 (-) False AMCG00015535
TU122879 other downstream 108221 11014625 ~ 11245562 (-) True G98502
TU122882 other downstream 108221 11014625 ~ 11245562 (-) False G98502
TU122884 other downstream 115933 11023169 ~ 11237850 (-) False AMCG00015532
TU122943 other upstream 28168 11414367 ~ 11416662 (-) True G98546
TU123499 other upstream 2071928 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 2285116 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 2455030 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 2455030 13841229 ~ 13864738 (-) True AMCG00015612

Expression Profile