RNA id: TU122943


Basic Information

Item Value
RNA id TU122943
length 2258
RNA type TUCP
GC content 0.41
exon number 2
gene id G98546
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11414367 ~ 11416662 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAATAAAACATGTCTATATCCAATCTAAAACAAAAGACAGGACACAAATATATTGAGGGGGTGGACAGTCTAAACCTGTCtgagtttttaaatttgtattttattccgCAGAACTGTTTTCAGATCAGAactcacacattttgttttggactGTGAGGCTGCCTCTAAAGGAACCACACTTTACATTCTTTGGAAGCTAGGACCATTAGACAGATTGTTCATATGTCATCtggtttaaaatatactgtatacatttatatatatatatatttattttttaaacacacatgctTCAGTAGGACAAATACAGGACTAGCGGTCTAACTCTCACGTAAGTTTAGACGCACATACGCACACACGATCACCCTGATTTTGTTTGCAACTACACAGGGTCACAGTATCACAATACATGAAGACAGACAGGGAAAGATAAGGATGAGCACTTAACTTGACTTTGAGGAGCTAGGAGGCAACTGGGCGAGTGTGGATGGTAAACAACACGTGTTTGTAGGATGAGGAGTGAGAAAATCCAAAACACGTGACTGATCAATTTGGAGCCTTgataaatgaaatcaaatagTGATTACCTGATCAAAATATCCATCAAAAGTTAaacatttgtctgtgtgtgtgcaaaataaaaataccaacaCAAGGGGGTGCCACTgagctacaaaaataaataactggatTCAGTGAAATTGTTAAGGCAAACTATTAAGTTTTCTTAAATGTTACTTAATATAtaaagggtggggggggcaagGGGAGGGGTCCGGAGGTAGgacataaatatacagtactgagACGAGACAGTTACCAAAAGCAAAGCACGACTCAAATCAAATCTCTTCTAGATAACCGGCATAATCGTAATAATGATAACTAAACACACAGGGATTCACACACAAGCAAGAAACACTGTTACTGTGCATACACTGTAggattaaaaaagcaataacaaaaaaaacattacatgtcAAGGGTAGTATTTGTtcacactgccccctgctggctgGAAGACAGAAATGATCCTTAACTCAGGGATGTGTTGATAAACGAGACTGCTGTTGTCAATGTATAGATTAAAATCCAGAATATTCCAAGTGACtgactttgtatttatttgtactatatatatatatataaaatgttttaagaattCAGCATCAAGGGCAACAATCAATATACAAACACAGTGAACAGCAACTGGCTTCTGTATTGCTGtatatttagtcatttattaacCTCATTAAAGCATTTCCTAGTTGCTTTGCCTGAGTACCCCCTGTAGCCCACTGCAGCTGTCTGAACTGAAGTTTGAAAATATTTGGGGGTGGCCTCTGCCACGAGAGATGCTTTTTACGTCCAATGAGAAGACAGAAGTGGGGTCACCAGAACTTTCATCCACCAATCAAACGTCTCCATCTGGTGACACTACAGTACGCCTGGTGGTGATGTCACAATGGTTGATGAATAACGCAAAATCAGAGATTAGAGCCGTCTTGTTTTTGCTAGATAttaaacgtgtgtgtgtacaggcCTGTAGAGCACTGATTTGCAGTGATGCCGTGTCTGCAATATGAAGAgcggtggaaaaaaaaatccctttgttaggttaaggggggggggggtggatacAAACAGCCTTAGATGTGCTAATGAAACACAGCTGGTGCCCATAATCTTTAAACAGTCACATCCCGGAGGAGAGATGAGAGACGAGAGTAGaagctattttgttttcagtattacTTTTAACCAGCCTAAACTGAATATCTGTgaagtgcatatttattttaatatatactgcCTGAGTCACCGAGCCAGCCAGGGGCAAACGAACTGCATAATCCTTTTTATAATTAGTGGTtggttttgtcatttgttttatttttactgttttacaaCCATGACTAAGGAAGCCTCACGCAGATTGAGGAACACACTCGACACAAGTGAAAGaggaaaaaggaaatcaaaatattgtACTCTAAGCTTTGTTTTTTGCTATTAGTGGTTTCCTTGCCCCCTCTTGGGTTAAGGGGTGGGTGAGGGAGGTTCGGGGGGGGCAGGCACAGAGGGGAAGGTGGGCCCTGGCAGATTAGCGGGGATCGTCAGGGGCAGCCAGCTTGGCCAGACTGGGCTCCACCCCCCAGATCTCCCTGGCGTACTCGGAGATTGTGCGGTCGCTGGAGAATTTGCCAGAGGTGGCGATGTTCCGGATCACCTTCTTGGTCCATTCTTTGGTGTTCT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122939 lncRNA downstream 28168 11378013 ~ 11386199 (-) True G98543
TU122937 lncRNA downstream 56602 11353783 ~ 11357765 (-) False G98543
TU122914 lncRNA downstream 79520 11332663 ~ 11334847 (-) True AMCG00015540
TU122894 lncRNA downstream 264503 11143518 ~ 11149864 (-) True G98510
TU122857 lncRNA downstream 565109 10848289 ~ 10849258 (-) False AMCG00015524
TU122994 lncRNA upstream 130973 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 983071 12399733 ~ 12405371 (-) True AMCG00015557
TU123059 lncRNA upstream 1029336 12445998 ~ 12446953 (-) True G98648
TU123060 lncRNA upstream 1030926 12447588 ~ 12447829 (-) True G98649
TU123061 lncRNA upstream 1032634 12449296 ~ 12449821 (-) True G98650
AMCG00015540 mRNA downstream 68877 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015541 mRNA downstream 91867 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015535 mRNA downstream 153772 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015536 mRNA downstream 230477 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015532 mRNA downstream 389754 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015557 mRNA upstream 988525 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015556 mRNA upstream 1046394 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 1065060 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015562 mRNA upstream 1156801 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 1206596 12623258 ~ 12640668 (-) True AMCG00015561
TU122938 other downstream 28168 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 153199 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 153199 11257278 ~ 11261168 (-) False AMCG00015535
TU122879 other downstream 168805 11014625 ~ 11245562 (-) True G98502
TU123499 other upstream 2041465 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 2254653 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 2424567 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 2424567 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 2424567 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile