RNA id: TU122970


Basic Information

Item Value
RNA id TU122970
length 1777
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G98569
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11466852 ~ 11468628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAAATCGACAGCTTTCAAATCCTTTCTTCTATTTCTCTTTGCGCCAACAAATGCGTGTGTATATTGTATGTGGGAGGCTTGTACAAGctgctaaaaaacaaaatacatataactgAGTTAATATTTACAGATTGGTCTGAAGTGGATTTGGCGTGCTTTCCTGCCAAGATTATCTGGCATCGACTTGTGAAGGATTTGGGCCGCATTCCCAAGGAAATTGATCACGGAGAAACTTCAATTTCAGATTGGCATTTTCTTTCAAAGCGCAAACTCTCACCTTCACCAGAACAGCTAGGCTGGTTGTAAAGGTTGGTAAAAGATTTACTCAGGACTGAGCACATAAGTTTTAATACgatttttcatatgtttttgcagttgttttttcccctgaaTTAATAGACCGTATAGGGGCTGACTGTgtgaatatatcatatattgTTACAGCAACTGCAATATGCATATTGGCCTTTATAGATAGTTTTGCCTATTTTAGACTTATTCTTGGCTGTCCCTCTCTACGTTTACAGCTGTAATTAGTGTTAATCCTGGTCTACTTCTCAGTTAAATGTGATGACAAATCACACGTTTTTCGTAATTGCTTtccattaaaatgacaatgctTTCTAACTACCCCTATCTATTGGAGGTGTTTGAGTCAAACAGACAGAACCGCTTTGTCTGCTGTGTGGACGCTGTAGCCATAGGGACTCGCGTCTTGGGCTTGAAATGGTCCAATGGTCCACCAATGAGTCCAAGCTATTTAGTGAcctatattaaaaatgaattggagGGAATTTGATGActgatataagaacataagaaagtttacaattcgagaggaggccattcgacccatcatgcttgtctggtgtccattaataaccaagtgatccaaagaccctatccagtctatttttaaatgttcccaaattttcagcatctaccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttccgttttgaatgccttgaagcccaatttccatctgtgtccccgggtgcgtgtgtccctgctgatttggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtcatACACTTCCTATTTCCTGAAATCTGCACGTGATGCTGATTTATGCCCCCCTGCTTGGGGAGGGGGTGGACAACAAATGCTAGTAGGCTACTTTAGGATCAAATTTTAGTCATCCAATTatttacacagacacagtctGACAGAGCAATGCAAGTCAATTGCCTCCTATTTATTCATGGTTTTAATCTGTTCTGGCCCAATGTGttggatttgttttctcatgCTTTTGGCAAACCCTTCATGGCTTTGCCATTCTGGATTTTGAGGCTGGTGTAATTGCTGTGAACACATACAGTAAATATGATCCCTGCCGTAGGCCTACAACCGAACATCTTGCAGCCACAGTGAAATCCAGGGCAAAACCAGGTGTGATTTTGATTGTGTATCAGTCGTGAAATCCAGGGTCAATACCTGTAGCGAATGTGTATAAAACACCTTAAGCACTGACAGACGCGCACTGGGATTTCTGTGTCTGTGGAGTCCTGGGGGGAAAGAATCTGTACACAACAGGGTGTTGATGTTTGAGAGCCAAACAATCACCAAAAAAATACCAGAGCCAGGGTGCTGTCAGTATTAGTTGTGTCTTCTAAGAGTTTGTGGAGCAGCAGACTGTGCTACCTGGCTGTTGTGTTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122927 lncRNA upstream 50253 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 100998 11362033 ~ 11365854 (+) True AMCG00015544
TU122785 lncRNA upstream 239031 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 447743 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 528286 10924132 ~ 10938566 (+) True G98430
TU122993 lncRNA downstream 78937 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 931105 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 1343848 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1745242 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 1788471 13257099 ~ 13259347 (+) True G98838
AMCG00015548 mRNA upstream 971 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015542 mRNA upstream 52334 11393516 ~ 11414518 (+) True AMCG00015542
AMCG00015543 mRNA upstream 74260 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015545 mRNA upstream 95944 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015544 mRNA upstream 104665 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015549 mRNA downstream 213663 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015550 mRNA downstream 472858 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015551 mRNA downstream 525554 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015552 mRNA downstream 587586 12056214 ~ 12058714 (+) True AMCG00015552
AMCG00015553 mRNA downstream 771908 12240536 ~ 12244228 (+) True AMCG00015553
TU122931 other upstream 105109 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 399997 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 725719 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 1016189 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1149527 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 991956 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1507011 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1955252 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1964423 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1964423 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile