RNA id: TU122993



Basic Information


Item Value
RNA id TU122993
length 255
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G98590
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11547565 ~ 11547819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccaaaagatattccctcatttggggttttgatgatggtggtggagagcgctggctaacacgtcggtccagaatctcccataggtgttcaactgggttgagatctggtgactgcgaaggccatagcatatgattcacatcattttcatactcatcacaccattcagtgaccctcgtgccctgtggatgggggcattgtcatcctggaagagaccactcccatcaggatagaaatgtgtcaccataggataaaggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122970 lncRNA upstream 78937 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 130966 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 181711 11362033 ~ 11365854 (+) True AMCG00015544
TU122785 lncRNA upstream 319744 10893173 ~ 11227821 (+) False AMCG00015528
TU123031 lncRNA downstream 851914 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 1264657 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1666051 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 1709280 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 1713176 13260995 ~ 13262832 (+) True G98843
AMCG00015548 mRNA upstream 81684 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015542 mRNA upstream 133047 11393516 ~ 11414518 (+) True AMCG00015542
AMCG00015543 mRNA upstream 154973 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015545 mRNA upstream 176657 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015544 mRNA upstream 185378 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015549 mRNA downstream 134472 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015550 mRNA downstream 393667 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015551 mRNA downstream 446363 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015552 mRNA downstream 508395 12056214 ~ 12058714 (+) True AMCG00015552
AMCG00015553 mRNA downstream 692717 12240536 ~ 12244228 (+) True AMCG00015553
TU122931 other upstream 185822 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 480710 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 806432 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 1096902 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1230240 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 912765 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1427820 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1876061 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1885232 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1885232 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile