RNA id: TU123031


Basic Information

Item Value
RNA id TU123031
length 5387
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G98625
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12399733 ~ 12405119 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGGGTTGTATTAAATTTTATTtggtctgtttctttttttcttttgtctcatGGTCCACAGGttataaccaattaaaatattttaaaacaaatacacataaaaacaacagaaataaagtTGTTTAGGCCCAGCCCAGTGCgctatttacaaaaaacatcaaGATGCACGATGAAGACACACTCCTCCAAAAAGCTTTTACgcacattttattcataaacaTGAGTGGGGGGGGAATGTAATTAATGGAGTCATATTAACCAGGCTGTGAGAAGTTGCaacatatatactttatatagcCTAGACTTTAgaataagagagaaaaaaatatatatggaatgTTTTACCAACAGAAGTAATATTGTAATTCCCTAAAATCGATGGTTATATACAGAAACCGTCGACCAATAGCAGCCATCTTGGCTCCCATCAATGGGCTTCTACAGTCTGGTATTGGCCTCCGAGCGAGAATGATGCTCTTGGCACACACTTCAATCTGGGAGGATACCTCAGTCACATACATTAGAGTAGGGATGCCAGGAAgggattatttttgtattttgtttaggtCTGGTACAGCAGTGAGACAGTAAATCTAATGATCCTATTAATGATGTAACACAAACGTCAATCTTGGCTTCTGTAGTTCCAAAAGATGGGAAACAAGGACAATTAACAGTGGAGAGAGATGCATCTATTAGacttcagtatttttatttatttacttttttggcaTCTTGGAGCTATGGAGGAAGAAaagtaagtaaaataattaaacaaaatagaaaaaaagcagGTCTAAACCTGGCAACATTTGTCCCCTACAAGCACCCATACTTCAGTGTTAGAAACTCCAGTGAAGACCAAAGGGGgggtgaaacaaaaacaagtatcCTGATTGCACTCTCCCGCTCCCTTTTCCAAACCCACAGCTGTAGTCCAGTGTGAAAAGTCTATAATACCTTGTTCAGACTttactaacaaaaacaaaaaatgctacGGTTCACAACAAttgaagaatgaaaaatgaatttctAAAATAAGGTTTCTAACCTGCCACCCCCCCACAATGTAGACCTTGGGATAGAGAAGtttgtactttttaaacatttaaaacttttctttaatttcaatCATTACCTTAAATGGCTTAAATTAGAACAGCTCCCATCTTTAGCTATCGCGAAGCTTCAGATACCTAGAAAAGTAGTATGACTGCTGGTCTCCAGGACCAAGAGAAAGAATTAAACTCTTAAAGTGACACTGTACAAATAACTGTGAATTCTGTCTGGACCTTAAAAGTTGGTTTAATAGTGAGATTTAATGTAGAGGTgcaaaacagcttttaaaaggCTAAAATAGACAATGCCAGCTGTTCAACATCACCCCCTTGTGGGGGACAGAAACAACTGCACTTACAGATTAAGTCAACAAATGAGGTGGACTTAATTAGCCAAGTTCAAGGTTGACAACGTGGAGATGCCAACAACATGCTGCCTGGCTTTAAGACATTTATATTCAGCTCAGGTTTGTGCACCAACAGGCTGTGTCTGCATTATGCACaagtctttcattttaaaatgtctaaaattgAACGGTCACAGAATTATGAATCACGTACAGACTTAACCCCCCAACTCCACCGGAAAACCAGCTGCATAACACTGtggaatttatttaaaactatctatctatctagctatCTACGGTTTGTGGTATCTGAGTTAAGAGCTGTGGGTCTCCCAGTGTGCCGTTCACGTGAGGTAAATCGGCCCAGTTGGAATAGTGCCGCATTAGGGGATGCAGGAGCAGCCTGGTCAGTTAGTGCTGGTTCACAGGGATTTAGACATCCAGCTGATTACCGCGGTTAGTGGTTCAGATAAGAACTGACCGGTCTGACggatgaaatctcaagactacaGTGCGTCtataaaaaggaataaaaataatgtttttgacttaaaaaaataaataaataagaatctGTATATAGCTATCTTTCTTTCAAATGCCATTTATATGATCAAACTCTGCTGGATAGTTTAAGTCATAAAGGAACGGATTCCAGTAGAGCACAGACATCATTGTTCTCTGACACGTTTACCCATCGCTGCGGTGTCAGTGCGCCACGCGGCACATTTAGGATTCCTAGatttcagtatatttttttttatattcctctctttcttttctatgGATGACTTCAATTATACCATTCAACACTCTGCCTTTGTCTGGAAGATCAATTTCATCTTCCCGGCGAAGCTCCAAGCGTGGTGAAATGTCAGGGTTATTCACAGTGATGGTTTAAGAAGCAACcacggggagagagaaaaatacaaagtcaaaaatctatgaaataataagaaatacaaaaaaataaaacagccatccaaaaatgaaatgatttttCCTGATTTTTTTGGGGACGTTCTCTCTTTTCAGACCGGGGGGCTTCGAATTTTGAGAAAGGCAGTCGTGAAAATGTCAAAAGCAGTTATATAGGCCAGACATTGGAAATCTGTTGGAATgtattaaaacactgaaaccttTTTGGAGTGTAAATAATCAGTTAAGTTTCAGGGACtttgaaaataactttaaacACCCATTAAAGAGCAACCTGAACTTAACAGAATAGGAATAAGGGAACACGTATTGCTTGCTTCGTCCTCCCAAACTTAATGACGGATTCACCTTTGTGGACAAAGAGAGCTTTCAGGTACTCACCGATTCTGATACGAGACGTGTGCCTTCATCTGAACTTGTATTATACTTGATTAATAGTATCTATTGATTATGAAATTGGTTTCAAACATCTTGAGGCACCATCTTTTTAGTCCTTTATATCAGTAAAGAGCTGGCTTAAGAACAGACCTGCTCTCGATCGGATTGGACACTCCAGTGTTTGACTACCTCTAGCTTACATACCAGATCAGGCGAGACAGAAATGTCACCACCTGCCTCTAACGAAGGTCAGAAAGCTAAGACAGGGAAAAGAAATCATAGAAATGGTAGACCCCGAAGAGATGGAGTGAACAGAGAGAGGACAAGGACAATGGAGGAAAGACGGTCACTTCTGTGGATCCCACAAAGCCACGACCCCAGCGACAACGCATGCACCTTTTTCTGAAATTCCCAAAGCAGGTGCACGTTTCCAATTTTCAATACATTAGGGATTTCCCTTTACTCTCTTTTCAACTCCCAAATGACTCGCAGTAAACACAGCCCTGGTCATCCACAGGTGGAGTGGAGGACTGTCTCAAGTACGCAGGCCGAATTGGACCAGTGCCGCTCAACAGGTTGCTCCCATCGGTTTTCTAAATGTGTGAGGTAGCACAGAATGGCTTAACAGGTGGCTCTTACACACCCAAACAAGCACTGAATCACAAACTGCATCTTCGCTCTAGGAGTTTAACTTCCATGAATGTATTCCTGTTGCTGCCGAGTTCCCTTTATCCTCTGCCGTATTTACCTATGGATCGGATATGTCCTCCGCAATGATTTACCTACTtattttgctttccaaagaGCTTACCAAATGTTTGGAGTTGTCTTCCAGCTGTAGCCCACTGTGCCTAAACATAGATGTTCTTTGATTTGTAAAATGGCTGACTATTATTTTCGTGATCCTTTTCACAATAGTCAGAACACGATCCGTCGTTAGCTCCTTCTGCACTCGGGTCGCAGCGATATTCTCGCTGTTATTTTACAGACGTGCAGTTTGAGAGAAGCATGCAGTATACTGTATTAGAGCACCTTAAACTGAAATTTGTTCACTTCTACAGACTCCTCAGGGGTCAAAACAACATTGCATGCAAGTGTGTTGAGGGTCTATCTTTTTTGGAAACCCGGTTTAGTTTTTCCCCTGTGGAACAACGAGATGAATGACAATAAACCGAGGAACGTTTCTCCATGGTTTGGTTAAGATCACTATCTGTCCTAATCCGGCCTTTACATTCTCCCATTGTCGTAAAACACAATGGTCTTTTAAAACTCCCGCCTGTCTCCTGATCTTTAAGTGCACCCCCatcccaaaaataataaaataatacaaaataaaaaagagcagCTTAAACACCAGACTGGATGAAATGCTACAATGAAACAActgcatctaaaaataaaaataataataattaaaaaaaaaacagtactgtAGAGGAAACCGATTTAAAGATCGTAAGCTTGTCTCGGGACattaatgagattttttttttttacgccTTTCAAAAACGTCTACCCTGGAGTGCAACGCTGAACGATTtccaaaatatgcaaatgctCCCCTTCCCATCCACCACCCCGTACCCACACGCTGTAACGCTGCTCAGATGACGTTACAAAATCTATTCTCTGACCCAGCGATTCCTGCCTCTCATGCTAAGCCTTGAGGGAAAAAGTATAGATTCTCCACGAGGAGAGCAACCTGCAGTGACAGAACTAGTGCAAATCAAAGCAGTAGTCATGTGACCACCTAatggagattttgtttttgtgtgagcATCCGGAActtgggatttaaaaaaaaacacagcaggggAGCAGTGCAAGCTTTATCGGACGCACTTCACTCACGGCATGTTATTTCAAAAGGAAAGAGGAATTTGACCCGTTTTGGGAGCGAGTGCCAAAGTGATGTGAAGTAGCAGACCAGCCCTGCAGTATAGCACTTAAGTGTAGagcagtgttcttcaaatcGAGTCCCGGGGAAtcacaattaactttaaaatgtcatctgCATTAGACCTAGCAAAAGAaaggtttaattgtttttgtgtaagCTACTAATTAGAGCTGAGGGTAGAATGGATTCCAGAAGGGACAGATTTCAAGAACACGGGCACAGAGGTTGGAATATTCAGAAATCATACAGAAACGTGCTCTGGCAGTCAGTCGGGAGGCGGGTTCAAACAAACAGGGAGCCCTATAGGGAAATGATGGGTCTGACCTCTAGGGGTCAACTTGGGGAGGCGGGAGAGCGTCAGATTCTTAAATCCCAGTTTGATTCCCATAAACAAGACCGAATCAAAACGCCAGGAGTTAcattccttgtttgtttttcttctgcctCCCGATGGCTTGCGGCTCTTCCTTGACAAGAGCTGTGGGATGGGCCTGCGAGCTTCAGATGGTATTGCATCCAAAATGTTGTTAAAAGAAAACTTCAGGTGAGCAAGCCCCCAAGTGTGTGGGTGTCCCGTATGGATGGATTTCCTATGGTGCAGCCCCTTGATGGCAGTTCTAGCTTGGACATGTGCGTTTCAGGTGGAAGTCCAGAGTCTATGAACACAAAGGCAAAGAGGCTCTCtcgttttcttttgtttccccCTTCCCTTCCGTGAGAGGACTCACCCAGACCTCCCCCGTGCCCTCCCAGGTTCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122993 lncRNA upstream 851914 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 931105 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 983134 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 1033879 11362033 ~ 11365854 (+) True AMCG00015544
TU122811 lncRNA upstream 1380624 10988856 ~ 11019109 (+) True G98442
TU123159 lncRNA downstream 407357 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 808751 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 851980 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 855876 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 855891 13261010 ~ 13262266 (+) False G98843
AMCG00015554 mRNA upstream 45013 12295104 ~ 12354720 (+) True AMCG00015554
AMCG00015553 mRNA upstream 155505 12240536 ~ 12244228 (+) True AMCG00015553
AMCG00015552 mRNA upstream 341019 12056214 ~ 12058714 (+) True AMCG00015552
AMCG00015551 mRNA upstream 401512 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015550 mRNA upstream 455264 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015555 mRNA downstream 29047 12434166 ~ 12462123 (+) True AMCG00015555
AMCG00015559 mRNA downstream 89803 12494922 ~ 12497034 (+) True AMCG00015559
AMCG00015558 mRNA downstream 149158 12554277 ~ 12565755 (+) True AMCG00015558
AMCG00015563 mRNA downstream 270123 12675242 ~ 12699160 (+) True AMCG00015563
AMCG00015564 mRNA downstream 325583 12730702 ~ 12740233 (+) True AMCG00015564
TU122931 other upstream 1037990 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1332878 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 1658600 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 1949070 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 2082408 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 55465 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 570520 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1018761 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1027932 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1027932 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile