RNA id: TU123159


Basic Information

Item Value
RNA id TU123159
length 217
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G98731
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12812476 ~ 12812692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaagtgttttgtgattattatataatgttttatattaatactagcattagaagtagttttgtatacagactgagcagattcgatttagcaggacaagtaaagggtcaacaaggtcgatttgttagaaactcctgtcagtaatgaaagattacacagtgccgaaatagcctacagatgtctgctgtgaatttgtttatgacttaatcgtttctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123031 lncRNA upstream 407357 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1264657 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1343848 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1395877 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 1446622 11362033 ~ 11365854 (+) True AMCG00015544
TU123289 lncRNA downstream 401178 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 444407 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 448303 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 448318 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 574384 13387076 ~ 13391419 (+) True G98876
AMCG00015567 mRNA upstream 20976 12788993 ~ 12791500 (+) True AMCG00015567
AMCG00015565 mRNA upstream 63408 12746482 ~ 12749068 (+) True AMCG00015565
AMCG00015564 mRNA upstream 72243 12730702 ~ 12740233 (+) True AMCG00015564
AMCG00015563 mRNA upstream 113316 12675242 ~ 12699160 (+) True AMCG00015563
AMCG00015558 mRNA upstream 246721 12554277 ~ 12565755 (+) True AMCG00015558
AMCG00015566 mRNA downstream 47344 12860036 ~ 12874762 (+) True AMCG00015566
AMCG00015573 mRNA downstream 74167 12886859 ~ 12896411 (+) True AMCG00015573
AMCG00015572 mRNA downstream 90240 12902932 ~ 12907957 (+) True AMCG00015572
AMCG00015571 mRNA downstream 101974 12914666 ~ 12922985 (+) True AMCG00015571
AMCG00015576 mRNA downstream 179540 12992232 ~ 13011882 (+) True AMCG00015576
TU123045 other upstream 349811 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1450733 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1745621 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2071343 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 2361813 10448166 ~ 10450663 (+) True G98302
TU123193 other downstream 162947 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 611188 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 620359 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 620359 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 632833 13445525 ~ 13447279 (+) True G98884

Expression Profile