RNA id: TU123193


Basic Information

Item Value
RNA id TU123193
length 533
RNA type TUCP
GC content 0.53
exon number 3
gene id G98759
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12975639 ~ 13046813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcagtcaaggctcattgatgcacgtggggagcgaaggctggcctgtgtggtccgatccaacagacaagctactgcagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccacagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccacggagcagtggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccaagttttctcaatccaatcgagcatctgtgggatatgctggacaaacaagtccgatccatggaggccccacctcgcagcttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123159 lncRNA upstream 162947 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 570520 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1427820 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1507011 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1559040 11362033 ~ 11416599 (+) False AMCG00015544
TU123289 lncRNA downstream 167057 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 210286 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 214182 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 214197 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 340263 13387076 ~ 13391419 (+) True G98876
AMCG00015571 mRNA upstream 52654 12914666 ~ 12922985 (+) True AMCG00015571
AMCG00015572 mRNA upstream 67682 12902932 ~ 12907957 (+) True AMCG00015572
AMCG00015573 mRNA upstream 79228 12886859 ~ 12896411 (+) True AMCG00015573
AMCG00015566 mRNA upstream 100877 12860036 ~ 12874762 (+) True AMCG00015566
AMCG00015567 mRNA upstream 184139 12788993 ~ 12791500 (+) True AMCG00015567
AMCG00015581 mRNA downstream 29486 13076299 ~ 13107013 (+) True AMCG00015581
AMCG00015584 mRNA downstream 64514 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015580 mRNA downstream 107705 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015583 mRNA downstream 121844 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015587 mRNA downstream 193378 13240191 ~ 13242891 (+) True AMCG00015587
TU123045 other upstream 512974 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1613896 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1908784 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2234506 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 2524976 10448166 ~ 10450663 (+) True G98302
TU123357 other downstream 377067 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 386238 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 386238 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 398712 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 529383 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile