RNA id: TU123296


Basic Information

Item Value
RNA id TU123296
length 2249
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G98838
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13257099 ~ 13259347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaaaaataattttaacatcatgttaaaaaaatgcttattttaagaTCTGGCAAACCTTTTCAGCAAATGTACACACATGAGACTACAATGCGTGCACACACTAAAACTTGACACGATCCATTTATTGGAGACAAAGATGTAAGGTTCAAGGTCTGAAACACAGAGTTTGTGGGTTTTTTAATGCCCCATGTGAAATGGGTTGAAGGGgaacaaaagaacaaataatCATCAAAAATAAGATTTTGAGAGAGCTGTATTCACATTTaccatttcaaagaaaagacaGGACGGGCTACATTTCATTGCAGGTGTCAGTTGTGCTAAATGTTGTCCTTTAAGTGACACAAATGGCACATAGTGTTACATATTCCTTACAAGTCTTGACCATTTGTGTCCTGATGGGCTTACTGAATTGCTCTGATTTTATAAACCTAAAGGTCTGAATAAGACCTTATATGGAGAGTGATCAGTGCCAAagttaagatgaacgtgattatgaacatgaagatgattataaacatgaagatgattatgaagaggattatgaatgtgaacatgaggatgattatgaagatgattatgtgtatttatttatttcccgtttgtctctttgctatttacattttgcagtgcgcttctacattttgtagcgtctcttgtatttctttttcaatgtgacaaaacattgaactctgtcaatcagagctagtgGGCGGTAGCCAGTGCACTTATTGGCTAATCTAATgcacataatcatcttcataatcataatcacgttcatcttaattttggcactgatcaccctccataccTTGGATTGGTTTTTAACATAACCATAACTATGCTCTGGGTATCATTCCCTTGTCTTAACAAGTTGGTGAtgactgatttttttatttgtgattgtgTATCTTTAACAAGAGGGAAGTGTTTGTACACTCTCtcatgtgaaatatatttcagttcCACTAAGCGTTCATTGTGTGGAAAGGTATAAACATAGTTGAAATGTGAcagattttttaatattttggggGTTCTGAGAACCCAATAGAAGGTAAATAAAGGTTTTGACACCTCCTTCAGTCAAGCAAGGCTGGATGAAACCATTGGAAACCTGCCCTCCACTGGGTGGAATGAGCCATTGTGCTGCAGCAGAGGGCAGAGTGGGCTGGAGGAGGGAaacaaagcaatgaatgctgggttTGTTACCAGATATGTATGCTTGAGATGGTGCTTGTCCTCCCCTCCAACTAATGAAGGTTAAAACCCCATTATGGCTGTACCAATATCTGCTGTTCTGAGtaatgttgcagtttttttaaGGTTAAACCTTTAAATGTCTCGTTTAGGTTCTGCTATGTGCAGTCTCTCAAgtgatatttattaaatgtataggGAGAGAACAATAGATcgatattttaaatgttggcaGAAACCTTTCACAATGCAGATACACAGTTACAGTCCACCTGTGTGGAGGTTGGTTGGCCACTGTAAATAGTGTATGTGTGCCTATAgcataggcggactggccatcaggcaattctggcaaatggcAGAAGGGCCGGTccatttttttagtttagtgGGACGGTCCCCCCGTGTAGACACCCGGACCGCACATCGCCAACACAACCCACCGCACTTTGTCAGCACCCAGAACCACACTTTGGCAACAAAGCCCtaacccccatccccccacaCCGCACTTTATTGGGACCCAGATTTCACCAGCCGTTGCCACcctgggtaaaagtccagggccaTTTTATGGTCCCAGTCCACCCCTGGTTTGTAGtgaagatggatggataaatatgaaatgtcttcactcaattttaaaataaagactacAAACAGATCATGttcaaatgcataattatacaaaatgcacacatttatgTTGCAGCCGAGAACTTTGAGGTGAAATGCAGGAGGTAATAGAGTGGACAATAGTAATAggtaaggaaataaaaaaaaaaaaaagataatgctgTTTGAATACAAAGTGAAGACTGGAGACTTGGCCAAAGTAGGTTCCTTCAAAAAGTCCCAGTTCTGAGAAATTCTTAAGGCTGCATAAAGTCCAGCTTTTAAAACTTGCATAGATGAATAATCTGAAGTCGATGAATTGTGTTCAGTAGCCTGATGCATCCTGGGTCATTTTCTAAACAGCATTTTACAAACCTTGAAAACTAATGTTCTGTATCATTGTGTTTAGGCCAGAGGGAGAATGAAACCtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123289 lncRNA upstream 42453 13213870 ~ 13214646 (+) True G98831
TU123159 lncRNA upstream 444407 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 851980 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1709280 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1788471 11466852 ~ 11468628 (+) True G98569
TU123308 lncRNA downstream 1648 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 1663 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 127729 13387076 ~ 13391419 (+) True G98876
TU123368 lncRNA downstream 194540 13453887 ~ 13454126 (+) True G98888
TU123361 lncRNA downstream 198782 13458129 ~ 13459786 (+) True G98881
AMCG00015585 mRNA upstream 946 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 14208 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 85126 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015580 mRNA upstream 101146 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015584 mRNA upstream 144297 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015590 mRNA downstream 70235 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015588 mRNA downstream 92169 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015591 mRNA downstream 174107 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015597 mRNA downstream 242296 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 323769 13583116 ~ 13592136 (+) False AMCG00015602
TU123193 other upstream 210286 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 794434 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1895356 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2190244 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2515966 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 164533 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 173704 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 173704 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 186178 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 316849 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile