RNA id: TU123308


Basic Information

Item Value
RNA id TU123308
length 1838
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G98843
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13260995 ~ 13262832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgggcaaacgtacaaaatcagcaggggatcaaatactttttccctcactgtaaactaTGATTTATTTGAGCCAACAACCATACATACAGCTACTTACATTTGGATTCTGATTCCTTTCACATTATGACGTTACAGTTGGTTTCTGTGGATGTATGAGATTAATTTGCACATTGATTTGTGCATACTTAATTCTGTTTGGGTTTGAGCGTCTAATTTGCTATCCCAAAATGGTGTTTATGTTGCCATGGATACCCCCGATGTATTCCAATGGTAGTTCGAGCGTGCACCCTGcaaaatgtgtgtgagtgtatatatctatgACCACCAGTACATATTTGAACACACTCATTTCATGTAGAAATGCATGTGAAGTTGTGTCGTACCCAGGGCAAGCAATAATCCTGGTCAttgttggttttggttttggttttcacCATGGGATGGCTTCACACAGCAGCAAGtgttggttttctgtttttgtcagATAATATTTAGTTACACATATCATTATGTAACGAatatttggaataaatattGATAGATGGGTAAATGTAGTAAGTTCTATAGTAACCTATAAGGGAACAGACAGATAAATCAACAGGCTGATAGTAATAGACATTATATAGGAATTCTACAGACCTTTGAATactttgctgctgctgctgggcaaTCAAATTCGGTACATATGAATTGTTCACAATGAATAacaattagatttttatttctaaatttgaatttgtatatatgttgtgCAATGTAACCTGTTTAGTTCACCTGacaataatgaagaaaaattgACAACACTGATGAACCATTTTTGTATCCTGACTAATGTGACCGATTACTTGCTTCTGTGCAGATTTCATAGTGGTACACAGACATGAAGGATAATGGTACATGATACCATGACTATCAGTATTTTGagtgtttcattgtattttgaattatgaatgtttctgttttgctttgtttagcTATTTGTAAGAGTGTTTCACAAACATTAAGCATTAAATGgactatgttaaaaaataactgaagtttgtcagaaaaaataataaattgaaccTTTTAAGATACACTATTTATCTGGATTCCTGTTCTTTGAGCAGGTTGTAAGGAAAACCAAAGGTTAAAATGTGAAACGCTATGCATTTCCATTGAgctatgtgtttttattattagtattatttgggtacatttgttttttagtcCTTAGGTAGATAGTGTGTTTGTGGCTGATtgataacataagaaagtttacaaacgaggtgccattcgacccatcgtgctcgtttggtgtccattaataacgaagtgataTCAGAAGCAGTTAAGTCAAATCTAACTGTATTTAGCCGAAACACTGATGTTATTGCAATTAGGCTTCTTATTGttaggatttgtattattaggtGGCCTAATGCTGAAGGTGCTGGACACCTGTTTTTGTACTGATTTATTAGGGTTGTTAAACGCCTATGGGacattttgttatgttgaaAATGATTGCCAAATTGCATTAATCACTCATTTCagaaaatttacaaaaaacatattgtcCAAAAACACTTGTGCTATGTACAGTATCAGGCTCTTAACACACAAGCTTCCCTTACGGCCTAGATTTAGGTTGGTTCAGATTAAGTCGACTAATCGCATGAATTATTGGACATGTTGCCTCACTCGCAAATTTTTCTGAGATGACTTCTCCAAAACTGTAAGACCCACCGTGCTGAAACGTTACATGCACCAGACTTGTACAGTGCTCAAATATGTTGGATTGAGGTGAgttgcttaaataaaaaaacatggctgcCACGAGccaattcattttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123296 lncRNA upstream 1648 13257099 ~ 13259347 (+) True G98838
TU123289 lncRNA upstream 46349 13213870 ~ 13214646 (+) True G98831
TU123159 lncRNA upstream 448303 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 855876 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1713176 11547565 ~ 11547819 (+) True G98590
TU123353 lncRNA downstream 124244 13387076 ~ 13391419 (+) True G98876
TU123368 lncRNA downstream 191055 13453887 ~ 13454126 (+) True G98888
TU123361 lncRNA downstream 195297 13458129 ~ 13459786 (+) True G98881
TU123377 lncRNA downstream 230950 13493782 ~ 13516429 (+) True G98889
TU123406 lncRNA downstream 316892 13579724 ~ 13597715 (+) True G98901
AMCG00015585 mRNA upstream 4842 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 18104 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 89022 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015580 mRNA upstream 105042 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015584 mRNA upstream 148193 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015590 mRNA downstream 66750 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015588 mRNA downstream 88684 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015591 mRNA downstream 170622 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015597 mRNA downstream 238811 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 320284 13583116 ~ 13592136 (+) False AMCG00015602
TU123193 other upstream 214182 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 798330 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1899252 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2194140 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2519862 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 161048 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 170219 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 170219 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 182693 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 313364 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile