RNA id: TU123353


Basic Information

Item Value
RNA id TU123353
length 3854
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G98876
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13387076 ~ 13391419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGCAATAACTTCAGGATGCGAAGCACAAGAACAGGAACTttgcacataaaacaaaaacaaaacaaaaaacttgccAGTAAAACTAGGCTTTaagtaaaccaaaaaaacaaaacacaaaaataatacagctaACTCCAGGCTTATGCCATTAAGACAGTTGAACAGCTACCATAAGCTTGCTTTGCTTATTTAATACAGTGGCTGAGAGCAGCCATTACCTAACACAGGCTTCAACAAAACAGAACTGACTACAGGTTGAGATAAGGCCTATTTTATCCCCTTCCTGTAGCCCCTCCCGATAGGACCGGTCcactttcataaaaatacaggTGAGGCTAAATGTTCTATAACCTTAATTCTTATGCATAAACTTTTAGTTCCAGATtagtaaattacaaaaaaaaaaaacatttctgtatgacatgacaagaaaaagaaacaaactattGTCATACATCTATATATGAATGGTTGCATTAAGGAGAAATTGCCATTGCACTCGGTATCCCCTGCTCCTGCATGTATGGTCCTGAACACTGTCTGAAAGCAACCAGTGTCGCTCCCGGGCCCTAGGAGCGAACACAGCGAAACTCAAACCCTGAAGTAATGAGCTCTGCTGCAACCCTAAGTGTTTACCTTTCCTAAAcagataagaaaacaaaaaggcattacaaaaaaaacagagagcTTAAAAGATTCACAAAGCGCACGTATAAGCACATAGAAAGTGTCTTTTCCAGTCTTTCACCAAGATTGAATGTCTGGTGTGTTTACCCACATGACTTTACATGGAAGCTCCACGGGTGCTATTTGCGCAAGGTAAGGATCTTGAGTGGTTTATGTTAAAGTGAAATCTCAATTCTGCGGCAATGTCTAGCATCAAATGACAGTGTGAGTTTAATGCATCGCCATCAGTGTGCGGTTGTTGTCATGCAAAACACTAATGTTTGTGATGAGATCTGGACAAACACATCATCACAGTTTacaatattatcatttttttaattagttacttatggcgctaatttgagcccatttATAAAGCCCTAGAAACCCAGGAGCTTCTGAATTGGAAACACAGAAAATCTCTCTAGACTTATTGCACTCTTTTATTCTTGATATTGGGACGGTGCCCCTTGTGACTATCGATACCCATACAGAACACTAATTTACAGGGTCGTATTGAAAATCCTAAACTCACTCTTATCCTGCACTGCACTGGCACCAAAGCCCAGGACACTGAAGCCACCATCCTGCCGACTACACCAACTGAAGAGTCGTacaaatccagagagagatatatatttccaatcaaaaggtttttattacaagcagctgcaaggaagaggttcaagaggcaatctcgagaacagtcttagagaagttacaaactacaggcacttttatgcagaccagacaggagagaaagataacagccCCACGTCTGTCCCGTGGTGGCAGGCACAAACCTAACTTGCACTCAACTCATTAGGAAAACCCACATATGGTTAAACTGGGGAAAAtgtaaggcatatgtaatgtttaattcaCGGAGCCCTGGATCAGAATTGGATAGATGGTGGAGGCCTACTGACAAGATGCATCTTTGAGAATCTCTTTAGATGCATCTCCCGGTACCAGAGTCTTTGTATGGAATTGCTTTGCTCACCCCtatgttttaaatctttaaaactgCACTCTTAATGTAATGGTATTTCACTCCTGCTTCCACACAGTTTTATTTCCTTATACCAGCTCGCACATTCTCCCTGTGGGTTTTCACTGGGTGCTCTGCTTTCCTTACACATCTCAAACGCATGCCTTTTAGGCAGACTGGATTCTCtaaattgttgtgtgtgtgtgtgtctgtgtgtctgtattgccCTACAATGGACTGCTGCCCCATCCAGAGTGtatcctgccttgcaccctgtCTGCTGGCTCCAGCTCCCCATAGCCCTGTACTGGAAGAAACAGTTCACCTTACACCTAATTTGGCTGATGGAAACACTGAGGTACATCCTCCGACTCGGAATCCAACCTGGTGTTCTAGTGTAAAAGGGGCTAGAGACAAAGCCAGCTCACAGCTCTCTTTTATGATAAagtcaaaatacaaacaactaTGGCACCAATCTTTACATCTCTATTGGAACAATCCCTACGGTGTACTGTAACAGGTCAACTCAATTGTGGTATAATTTGATTATAACAACTATTTGCATGTACTATCATCTATAGATGAGCATTTTACTGTAGTACTTGTACTACAGCCCCCTACAGTAACAAGTAATGCACTGCACTTTAACTGCAGATCCCAATTGTCACAGGAGTATTAAGTTGTACTGTTCTAGTTGGGGGATGTAGTAAAAGGTCTGTTCTAGTGtgtgttgaatgtttttatatagCCACAATATTGCAGTGATTCAGTCTGAAATGGTTAAAGAGTAGGATTGCCGAACACAAGTCaagtattgttttgtaaaagctGAACAATTGCACTACCTGGAAGaaaatgtgggggggggggattatcAGTGTGAGCAATCAACCGTGAGCATTCCAACACAATTACATATGGTCAGAAATggcaaacataaaaaaggacTATCACTCAAAGTATAACTAACAAATCCAATAGCAAGTTATATAAACAGAATCTTTACTTCGGACGCATCTAGTGGTTGCAGGACCTCTCCATTCTCCCCTCTGTGGGTTCTATGGTGTCTTTTTAGATAGGCAGAGGTAGTGAAACGCATACCACACAGGGTGCACCAGAACGGTCTCTCACCAGTATGAATGCGGTGGTGTAATTTAAGGCCCGACGGTCTTAGGAAACCCTTCCCACACAGCGTGCAGCAGTATGGCCTCTCCCCTGTGTGAATCACCTGGTGTATTTTAAGTTTGCCTGAAGTTGTAAAATTCTTCTCACACTGGGCACAGGAATGTAATCTCTTGACACGGTgcattttttcttgtgtgtgacTCTGCTCGTGCCTTTTAAGAGCGTAGGCTTGACAGAAGCTCTTCCCGCACTGGGTGCATaagtacggtctctctcctgtgtgacgTCTCTGGTGTATTTTAAGGGTATATTTCGAggtgaaactcttcccacactggtcGCAGGACACTGGTCTTTCGCCTGTATGACTCTGCATGTGCTTTTTCAGAATGTGGGCCTGcctgaaactcttcccacactggacacattGGTAAGGTCTCTCTCCCGTGTGAATGCTCTGGTGGATTCTAGCAACATATGCCGTGGTGAAAGTCTTCCTGCACTGCAAGCAGTGATTGTTGTCCTGAGAATTTCCACTAGACTTTGCCGTGTTCGTACTTGCGGGTGGTAGAGGGAGGGGGCTGGAGGTCCCAGGCTGCTGTTGCTGTATATCCTCTACAGTAGAACAGGAGCTCAGAATCTCCACTGGCTCCTTTGGGGGTTTCTTCTCGATCTTCAATCCTTGCTGTCCTTCGGTTGTTTCCGATTCATCTTGGTGCTGATCCTGCTGGGCATGACTTGCCTCAGCTCTGCACTCTGCATTGGGTGCACACTGCAGCTTGGCCTCCTCTTTGACCTTGCCATAGTCAGTTACCTCAGGGTTTATGCAATGGGATCCTATATTATGAATAGCATCCTCCTCTTTAATGTGAAAAGGGAGCAGTGAACTATAAGTCCCAAGTTGGTGTACAGAGATTTTCTTCAATCTAACGGAGCAGGGCCTCAGAATATGCTCAGTATTGTTGCTCCTCTTCGGCTCTCCGCTCTCCCAGTCCCCTCTGTATGGCTCCTGCTGGGAGTGACCACTGGAGCCCCACTGTGCCTCACAGGGCTGCTGCTCAACAGGAAT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123308 lncRNA upstream 124244 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA upstream 124810 13261010 ~ 13262266 (+) False G98843
TU123296 lncRNA upstream 127729 13257099 ~ 13259347 (+) True G98838
TU123289 lncRNA upstream 172430 13213870 ~ 13214646 (+) True G98831
TU123159 lncRNA upstream 574384 12812476 ~ 12812692 (+) True G98731
TU123368 lncRNA downstream 62468 13453887 ~ 13454126 (+) True G98888
TU123361 lncRNA downstream 66710 13458129 ~ 13459786 (+) True G98881
TU123377 lncRNA downstream 102363 13493782 ~ 13516429 (+) True G98889
TU123406 lncRNA downstream 188305 13579724 ~ 13597715 (+) True G98901
TU123431 lncRNA downstream 399623 13791042 ~ 13810939 (+) True G98918
AMCG00015588 mRNA upstream 20946 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 49642 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015585 mRNA upstream 130923 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 144185 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 215103 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015591 mRNA downstream 42035 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015597 mRNA downstream 110224 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 191697 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015600 mRNA downstream 206867 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015607 mRNA downstream 297671 13689090 ~ 13716822 (+) True AMCG00015607
TU123193 other upstream 340263 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 924411 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 2025333 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2320221 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2645943 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 32461 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 41632 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 41632 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 54106 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 184777 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile