RNA id: TU123361



Basic Information


Item Value
RNA id TU123361
length 906
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G98881
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13458129 ~ 13459786 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTATAAAATAATGAGAACTTTTATTAATTAggtaatttaacaaaaacaagtcTGCTTGACCAGGTACACTCATTCCACTgtaaacagcaacaacatcTGTAACAACAACACATACTACAAAGTGAAAAAGGGAACGCATCTCAGCAAACAACTGATTAACAAGTTAATTAAGGAACACTAATGGGGCTCTGGGACCTCATTTAGACTAACCAAAGACCTGTGAGTCGGGTATAGGTGAACTTGAGACATTACTGAGCTAAACTTGATTAACTAGAACTGCCCAGTAATCCACTGGGGGGGTTAATGTCCAGTCAGTCAATTGGTGTATTTGCACTACACTATACCAGCCCCCCCAACCCCATCTCTCAGTGCAGCATTAACACCCAAATAACCcactccctgtccctctctctcgccCCTCATCTCAGTGTCCTGcagtgggagtgggagaggcAGCGGGTCCCCCCTGCTGCACCCTCTTCATGAGCTCCTCGTCCTGCATCGAGAGCTCAGTGAGTCGGCGGCCCAGTCTCTCATGGACGTCCAGGTACTTTGCCACACAGCGGTCCAGGCAGACTGCCTCACCCTTGGACAGCTCTGCCTCACGGTAATGGGGAGGCACACACTTCCTGTGACATGCGCTTGTCATCCGGTTATACATATCCGCCATCATCTCCACCTCCAATTCAGCGGCTAACTGCTGCGCCTTTAGCGGGTCCATCGCTCCCAGTCCCCGGTCTCCTCTCCGCAAGCAACCCGGAGCTCCGACTAACCAGTTTAGTTAACTCGGTGAACACGTCTGTGGACTCAAATGTACTCGCTTCGCCTTCCACTCCCGTCTGTCACCTTCACTGTCAGAAAACACGTGTGTCCGTCCCCTGACCCTGTAACCTCCTTCTGGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123368 lncRNA upstream 4003 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 66710 13387076 ~ 13391419 (+) True G98876
TU123308 lncRNA upstream 195297 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA upstream 195863 13261010 ~ 13262266 (+) False G98843
TU123296 lncRNA upstream 198782 13257099 ~ 13259347 (+) True G98838
TU123377 lncRNA downstream 33996 13493782 ~ 13516429 (+) True G98889
TU123406 lncRNA downstream 119938 13579724 ~ 13597715 (+) True G98901
TU123431 lncRNA downstream 331256 13791042 ~ 13810939 (+) True G98918
TU123465 lncRNA downstream 421639 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 421639 13881425 ~ 13884671 (+) False AMCG00015608
AMCG00015591 mRNA upstream 22002 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015588 mRNA upstream 91999 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 120695 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015585 mRNA upstream 201976 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 215238 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015597 mRNA downstream 41857 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 123330 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015600 mRNA downstream 138500 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015607 mRNA downstream 229304 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015609 mRNA downstream 342695 13802481 ~ 13821972 (+) True AMCG00015609
TU123364 other upstream 10850 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 20982 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 22427 13433051 ~ 13435702 (+) False AMCG00015591
TU123357 other upstream 28829 13423880 ~ 13429300 (+) True G98878
TU123193 other upstream 411316 12975639 ~ 13046813 (+) True G98759
TU123395 other downstream 116410 13576196 ~ 13593370 (+) True AMCG00015602
TU123399 other downstream 124184 13583970 ~ 13613292 (+) False AMCG00015602
TU123659 other downstream 637159 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1589137 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1854250 15314036 ~ 15314414 (+) True G99475

Expression Profile