RNA id: TU123377


Basic Information

Item Value
RNA id TU123377
length 2524
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G98889
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13493782 ~ 13516429 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAATGCCCGAACTGCGAGCAATCCACTAAGTAACTAACGTGAACACAAGCTCTACATAGtccatattaataaataacatcctattggctaataaccaggaagagttgctactaggttccacacaaaaaagtgcaacaaacctccataacaatacattaaaataattaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaaaacagtaaagacTGGGCTTAATCTTCAGACACTGCTGTGTAGTGCACAGCACCACCCCCCTTCATTGGAAAATCACTTGCTAGGCTTTTAGGTTAATAAATAGGGTaaatttaaacttaaacttaaaacttaaaaaaaaaattttaaTCTGTAAGATATCTCTATTATTTGCTGGTTGAGTCACGGTAGTCCAATAAAGATGACTGTACAGATCCCAGTGATAGAAAAGAGTTATGATGGAGAGGTGTTGGGGGAACAAAAAGGGGATTAACTATGCACTGGCCACTCCAGTCCAGATAAAACACTACCCCCTTTCCCTCTCATAACTCGTCTCCATCAGTTTGCATCTGTACAGTTGTCCCCAGGCCTGAATTGGTGTTTTGATGACTAGTAACTTAATCGGTGATCTTTAACTATGTGAATTATCCAGAAATGTTGGTTTTGAGTGAAGGAGTGTGAAAGTGGTGCACTATAGAGCAGCACAGTGGCTTAAATGGCACCAGTCCCCCTCTACTGTCTGAGCTCGGTCACAGTCATTGCGTTATAGTTCAGTAGCTCAGTATTGTAGTGGTCTATGTTCGGTCTCTACAGCCACTGTACTGCAACCTTGCCCGTCTGGACTGTCTCCCATGCTGCCTTGCAGCTGAGCTCTGTTGTCGGGGCTATTGTTCAGCCCCCAGCGCTTGGAGGAGGGTGTAGTTCCCTCTGTCTGCTTCTGTTCAGTCAGTCGTGCTGACAAGAATCAATCttgtggggaaaaataaaagcgGACGATGTATCCCCACAAGCACTTTCCGAGTCACCTCATTGTCAATGTTCATGTTTTGCCCCAGTGCATCACGAGGAGTGTAGATTTTTGCATCATATTCCTGAGACATATTCCAGTATAAACAAGGGGTCTACATTTCTTAGCATTGTGGGGGCTGGGCTGCAATAAGATGTTTCCCAGTGTATAAAACTTCCCAGGCTGACTTCAGTTCCTATTTTTATTCACATAAAACATTGGTTCAGATTTGACTTGGGGATTCTCTAACAAGACAATCTGAACACATCTGTAAAACAATTTTACTGCTGAGCTTGTGTTAAAGTCCAAACAAATTGCTGACTAGTGAAGTTTCCAAATGGCACTGGAAGACAACTAGGGAAGTGGTGTATTCTTGGAACTACTGTATCCTACCATGGTTAGGTACATTGTAGGTACAGTACTGTTCCCTTAGTCTGATTACTACttgtatgtacattttgaagCAAAACTGCTAAATTTCCCATGAGGCCTTGCTTTCATTCCTCATGGTGGGTGGTAATCTAACCTGGTGCATTATGGGGTCTGCAGTGTTTTTACATCAGGGCTTAAACAGACTTCCTGTGAGGAGTTGCAGCTGAGCCCCTATAGCAGTGGTTAAATTGTCCTGGTGCCATGTTGGGGGCAGGGTTGTGAATACAGTTGTTGTTGATGTCAGCACTATAGTTCAGCTCCTAGTCTTCGTACTGTAAAGCAGATTGCATAGAAACATCTGTTAAAGGACTAATTATCTTTCAATCATGTGTTAAGTGATTTGGGTCATCCAATTAaatttgtgtgggggggggggtaatggagtatacagtacattatacaAGATGTACTGAACACTATACATGAACACTAGAGGGGCTAGTACAGTATATTGCAGACTAACtagacactacagtacattcaTACACTACAGAGCATGGTTTAGTACAGTATCCTGCAGACATGGTGATTCGACACTACAGTACATACTGCACTTATAGGGTTCATCCAGTAAAATTGACGGACTGCatactacagtacattaacagtATAAAGAGGGGGGTTAGTCCAGTACGCTGGAGACCATGAATAATTGACTGGactttacagtacattaacactatGCCGTGTGTGGGTGACTGGACTATTCTTCAAAGATATCAATCGGACAGAAACAAGATCCTGACAGAAGTTAAACAATAGCACATTTaacttttgaaaggaaaatgacCATTTTTATTCCTCATCTTATGTCATTCTTGAATTCTGTTCTGTGGGCAAATTTTGGGGCAGTACAGCTTTGACTTTATGAATATGTACCACTGTCTTGCAAAACGTGATCACCTCTTGAAATTgcgttgtttttgtttatcatttttgggttgatttatttttccatttggcTCCTTCCTCGTCTTGGTTGGTCGCTACTTAAGAGAAATGTAATGAATCTTTTAACAATATCATTGCTTATTCTGTTCATGTATGTTGGAAttcttaattttaactttttcaatATGTACAACCCAATATGTAacttcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123361 lncRNA upstream 33996 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 39656 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 102363 13387076 ~ 13391419 (+) True G98876
TU123308 lncRNA upstream 230950 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA upstream 231516 13261010 ~ 13262266 (+) False G98843
TU123406 lncRNA downstream 63295 13579724 ~ 13597715 (+) True G98901
TU123431 lncRNA downstream 274613 13791042 ~ 13810939 (+) True G98918
TU123465 lncRNA downstream 364996 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 364996 13881425 ~ 13884671 (+) False AMCG00015608
TU123637 lncRNA downstream 401166 13917595 ~ 13918028 (+) True G99053
AMCG00015591 mRNA upstream 57655 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015588 mRNA upstream 127652 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 156348 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015585 mRNA upstream 237629 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 250891 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015602 mRNA downstream 66687 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015600 mRNA downstream 81857 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015607 mRNA downstream 172661 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015609 mRNA downstream 286052 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015610 mRNA downstream 316166 13832595 ~ 13834746 (+) True AMCG00015610
TU123364 other upstream 46503 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 56635 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 58080 13433051 ~ 13435702 (+) False AMCG00015591
TU123357 other upstream 64482 13423880 ~ 13429300 (+) True G98878
TU123193 other upstream 446969 12975639 ~ 13046813 (+) True G98759
TU123395 other downstream 59767 13576196 ~ 13593370 (+) True AMCG00015602
TU123399 other downstream 67541 13583970 ~ 13613292 (+) False AMCG00015602
TU123659 other downstream 580516 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1532494 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1797607 15314036 ~ 15314414 (+) True G99475

Expression Profile