RNA id: TU123406



Basic Information


Item Value
RNA id TU123406
length 1051
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G98901
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13579724 ~ 13597715 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctcagtgcagtgttaatgtactgtagtgtccagtcaatcAGTCTgttctgcactgtattatttctctctctctgtttcaggTGAACGTGGCTCTGATTGGCCTAAGTGTTCTGGCCTTTGTTCACCCCATAAATGTGTACCTGCATTGTCGCCGTGCGGCTCGTAGGAGAGCAGGAAACAGCACCCCAACAAGCGAGCAGGACAAACTGCAAGACTGAGGGGGCAACACTGTGAACTACCTACTGCCAATGCAGACTGAAAGGGAAAATATAATTCAGCCATTCAAACAGCTATATATACTCAGACACAGAATACAAATGCATGCAGAAACACACCgagacacagagacatgcagacacatacagacacagagacacacagagacatagtTACATGTTGCCTGGACAAAAGTGATGAGACACTCACAACTTCCCTGTCTCAAATTTTGGAAGGgcaaatatcaaaacaaatgtatttgaatatataatgggattttttttatataaaggaaTGCCCCATTCActataacattacattatagtCCTTTTACAGTATAGTACAGGACAATACACTCACACAGCCCCGTCACTGCAGTCCCTGTGGAGTACTGTTCTGTCTCCTCTCAGTCACAACTTCCACAGAATTACAAAGGATCTATTCACTTATATAAATTCAACTTAATATACCTCTGTATTCTTCTTTTAaccaatgtaaaaaataaattactatataaggaaaataaatactatgaTTGTATTATGTTTGTACTTTTTCAACATCTCCTTTTAGtgatttttattagtattttgtaaTGGAAAGAAA

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123377 lncRNA upstream 63295 13493782 ~ 13516429 (+) True G98889
TU123361 lncRNA upstream 119938 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 125598 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 188305 13387076 ~ 13391419 (+) True G98876
TU123308 lncRNA upstream 316892 13260995 ~ 13262832 (+) True G98843
TU123431 lncRNA downstream 193327 13791042 ~ 13810939 (+) True G98918
TU123465 lncRNA downstream 283710 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 283710 13881425 ~ 13884671 (+) False AMCG00015608
TU123637 lncRNA downstream 319880 13917595 ~ 13918028 (+) True G99053
TU123640 lncRNA downstream 327533 13925248 ~ 13933503 (+) True G99056
AMCG00015597 mRNA upstream 63140 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015591 mRNA upstream 143597 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015588 mRNA upstream 213594 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 242290 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015585 mRNA upstream 323571 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015600 mRNA downstream 571 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015607 mRNA downstream 91375 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015609 mRNA downstream 204766 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015610 mRNA downstream 234880 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015608 mRNA downstream 284895 13882610 ~ 13884666 (+) False AMCG00015608
TU123364 other upstream 132445 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 142577 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 144022 13433051 ~ 13435702 (+) False AMCG00015591
TU123357 other upstream 150424 13423880 ~ 13429300 (+) True G98878
TU123193 other upstream 532911 12975639 ~ 13046813 (+) True G98759
TU123659 other downstream 499230 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1451208 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1716321 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 2199235 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2533329 16131044 ~ 16131387 (+) True G99624

Expression Profile