RNA id: TU123642


Basic Information

Item Value
RNA id TU123642
length 347
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G99058
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13925248 ~ 13931122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtctTTGagcccttcgacttagtacttggtagcaaaacccttgttggcgatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgatgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123639 lncRNA downstream 6924 13918075 ~ 13918324 (-) True G99055
TU123635 lncRNA downstream 22934 13901356 ~ 13902314 (-) True G99051
TU123633 lncRNA downstream 40578 13883123 ~ 13884670 (-) True G99049
TU123614 lncRNA downstream 85017 13834517 ~ 13840231 (-) False AMCG00015612
TU123648 lncRNA upstream 103136 14034258 ~ 14038303 (-) True G99063
TU123777 lncRNA upstream 131297 14062419 ~ 14218784 (-) True G99162
TU123784 lncRNA upstream 158915 14090037 ~ 14091815 (-) True G99165
TU123789 lncRNA upstream 174332 14105454 ~ 14106445 (-) True G99167
TU123834 lncRNA upstream 363846 14294968 ~ 14320716 (-) False AMCG00015628
AMCG00015611 mRNA downstream 55258 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 74465 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015613 mRNA downstream 95526 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 164518 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 183013 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015614 mRNA upstream 126217 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 148372 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 166303 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 182872 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015621 mRNA upstream 191344 14122466 ~ 14128364 (-) True AMCG00015621
TU123617 other downstream 60510 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 60510 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 60510 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 186129 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 465459 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 395045 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 516589 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 550072 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 639529 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 643244 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile