RNA id: TU123653



Basic Information


Item Value
RNA id TU123653
length 678
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G99068
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14051495 ~ 14065138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagttaatacagtacagacacaggGACGCACTGACCgacacactggctgactgaTTGTCAGAGTCACTGACTTCCCTCTCTATCCCCACCCTGCTCTCTCGGATACCTGTCCAGTGAAGAGCACAGGGTTGTCCTTGTTGTCAGTGAACAGGAACATGTCGATGAAGTGGATAAGGATGCTGGGGGCGTAGCGGGACTGGTCCGAGCCCAGGGAGACCCACTTGAACACAATTAGGAAGACCAGGAAGCCGAACAGACAGAGCAGGAAGAGCACCTCAGGGATAAACACCAGCACAATACTGGACACCTCACGAAagtgcctgagagagagagagagagtcagagtcAGTCTATCAGTCAGTCTATCAGTCAGTCTATCAGTCAgtctatcagtcagtcagtcagtggtACCTGTagttgcagacagacagacagaccccGAAGGTCATGTGAATGACCCCGATGATCACCGACATCTTCATCTTGTAGGAGTTCAGAAAGTTCAGGTGATTATTGGACAAACTCCAGAtctacagagagacagaggtaatatagtacagtccagtacagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123640 lncRNA upstream 117992 13925248 ~ 13933503 (+) True G99056
TU123637 lncRNA upstream 133467 13917595 ~ 13918028 (+) True G99053
TU123465 lncRNA upstream 166824 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA upstream 166824 13881425 ~ 13884671 (+) False AMCG00015608
TU123431 lncRNA upstream 240556 13791042 ~ 13810939 (+) True G98918
TU123660 lncRNA downstream 31807 14096945 ~ 14097938 (+) False G99074
TU123661 lncRNA downstream 31807 14096945 ~ 14099137 (+) False G99074
TU123691 lncRNA downstream 61483 14126621 ~ 14136675 (+) False G99093
TU123692 lncRNA downstream 61483 14126621 ~ 14152625 (+) True G99093
TU123727 lncRNA downstream 206243 14271381 ~ 14425466 (+) True G99120
AMCG00015616 mRNA upstream 58406 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015608 mRNA upstream 166829 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015610 mRNA upstream 216749 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015609 mRNA upstream 229523 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015607 mRNA upstream 334673 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015617 mRNA downstream 24829 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015618 mRNA downstream 39190 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015619 mRNA downstream 75984 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015625 mRNA downstream 156458 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015629 mRNA downstream 388379 14453517 ~ 14456893 (+) True AMCG00015629
TU123399 other upstream 438203 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 458125 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 604216 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 614348 13433051 ~ 13437147 (+) True AMCG00015591
TU123659 other downstream 31807 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 983785 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1248898 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1731812 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2065906 16131044 ~ 16131387 (+) True G99624

Expression Profile