RNA id: TU123659


Basic Information

Item Value
RNA id TU123659
length 1926
RNA type TUCP
GC content 0.54
exon number 6
gene id G99074
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14096945 ~ 14100855 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGTGCAAGAGAACTGCCCAATTTTATTTCTCAAAGTCATTTTTCCCCAGTAGTGCAGACTGCAACAAGGGTACTCAATAACTATTGCAATCCCAGAGCAGCTCTTCCCAGAGGAGATTCAGTCCAGATGGGGCAGTCTGTGCAGTGTATCTAGGGACAGTGTGCAGGGTGTCCATGCAGACTGACAGAGACAGGAATCAATGGGTCTCCGTGCATCTAAACTGACAGGATTAAATGCCAGGTCATCCACTAGACAACTGTCCCGACATGCTATCCGTGGAGACTGTAGCATCTTGTGTAGAGGGACAGTGTATCTAAAGCACTGCACAAACTGTATGAAGTGAAGTGTCAGCTGGAATCAGCTGTGTGGAGATGGAACAATCTCCTCTCTATTAGCGGGACTGGCTGTGTATTAGTGTACGGTAGCTGCATTTGGCTTCGTGGGGACGGTCTTCCTTTCTTCCTCCCTCTTAGAGGTCTAGTAGACGTAGCTGGCGCTGAAGAGAGACTGGGTGGCGGACTGGTCCGTCTGGCCACTGGGCTTGTACTCCCCCTTGGACGCCAGGCCGTTGCTTGGCCCGGGTGGAGAAGGTGGTCTGAGCAGCCTTGGTGTTTCCTGGCTTGCCCTGCCAGGTGGCAAGGGTGGAGGCCTGCAGGGCGCGGCCATAGGAGAAGGTGAGCTTCCAAGGCCGAGGTAGGGGGCACTGGTTGATGGCGTTCAGGTTCAGCGACGCCTCCTCCTCACTCTGCCCCCCCGACAGGAAACAGATACCTGCAGCAGCTGGCACAGTACGGCGCAGGGCAGTGACTGTTGCCATGGCGACCTCCTGGGGGGTGTACTTCTGGGAGCAGGCTTGGCCGGCTGTCACCATGTTGGGCTTCAGCAGGGTGCCCTCCAGATACACATGGTGATCAGACAGGGCCTTGTACACTGCAGACAGcacctagagagagagagagttaatacagtacagacacactgactgactggacactacagcacagagcagtgttAATGAGCAAGAGGGCATTAATGCAGTACCATGCAGAGTGGCGACTCACCTTCTCAGTGGCATACTGGCAGCGCTGCAGGTTGTGGTCTCCGTCAGTAAGGATCTCCGGCTCCACAATTGGCACCAAGCcattctgagagagagagacggagctATTTAACAATTTCATTCCTTTTTACTGTAATGCATTGGGAACACTTCTGaaacttgtcatgccaataacaCTTATTTTGAATGAGATTAGAGCACAATTAGTCTTGCATATACCTTACTCTTCTTAGTCttcccaccacccccaccaacCGCATCCatccacctccctctctcctccaccccTCCCTGCACCTCTATCCCACTCCCCCTCTCTGACCTGCTGACAGATGCTGGCGTATCTTGCCAGCACATTGGCATTCTCTGCAattgagagagaagaggggcaGCAGTCACTGATCTTCAGCACACAGCGCCACTTGGCAAAGTCAGCACCATCCTTCTTGTACTGGGCACAGCGCTCCCCCAGACCATCcagccCCTGTGTCGTCGTCTCCCCATCTGTTCCAGCCAGAGCTGCTGTCCCTTTGTCCACCTTGATGCCCACTACGATGCCAGCGTCCTTGATGATTTTTGGGAACAGCACCCCCGTGTCGCTCTTCTGGTACAGCGTCTCGTGGAATAGGATGACCCCACCGATGGAGTTGGACAGCgcagggtcagaggtcagcagCAGCTGGCGGAACTGCCGCCGATGCTCCTCTGTGTTTTCAACGTTGATCTTCTGCAGCCTCTTCCCCATcgtccctgagagagagagagagagagagagagagagagagagagagaaaagtaaaTATAGCAGACAGTACACAATTGCGCCATCTCTTCCTCAGTTTCTCCGCTCCCTCCATTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123653 lncRNA upstream 31807 14051495 ~ 14065138 (+) True G99068
TU123640 lncRNA upstream 163442 13925248 ~ 13933503 (+) True G99056
TU123637 lncRNA upstream 178917 13917595 ~ 13918028 (+) True G99053
TU123465 lncRNA upstream 212274 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA upstream 212274 13881425 ~ 13884671 (+) False AMCG00015608
TU123691 lncRNA downstream 25766 14126621 ~ 14136675 (+) False G99093
TU123692 lncRNA downstream 25766 14126621 ~ 14152625 (+) True G99093
TU123727 lncRNA downstream 170526 14271381 ~ 14425466 (+) True G99120
TU123732 lncRNA downstream 215545 14316400 ~ 14324233 (+) True G99125
TU123743 lncRNA downstream 285278 14386133 ~ 14387285 (+) True G99136
AMCG00015617 mRNA upstream 678 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015616 mRNA upstream 103856 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015608 mRNA upstream 212279 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015610 mRNA upstream 262199 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015609 mRNA upstream 274973 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015618 mRNA downstream 3473 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015619 mRNA downstream 40267 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015625 mRNA downstream 120741 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015629 mRNA downstream 352662 14453517 ~ 14456893 (+) True AMCG00015629
AMCG00015630 mRNA downstream 361805 14462660 ~ 14467684 (+) True AMCG00015630
TU123399 other upstream 483653 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 503575 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 649666 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 659798 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 661243 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 948068 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1213181 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1696095 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2030189 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2997604 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile