RNA id: TU123727


Basic Information

Item Value
RNA id TU123727
length 2657
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G99120
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14271381 ~ 14425466 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcacggttaatgtactgtagtgtccagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtctgtactgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtctctccaGTAATGGAACACAGGGTGCTGCAGTTTTCTGTTGCTACTCACAGGTGACCCTGCCCTCCCCTCCAgtcagagagaaacagaaagagagagatggagagagatggagggacagagggagggaggttgggtgggtgggtgggtggaggCACTCCAGGGATCAGCTCCGCTTCAGCCCCACTGACAGCCCCACGATGAGCGCCAGCACGGCCAGTACACACAGCACTATGAGTGTCAGCAGCAGCACCTTCTGCAGGGGAGGAGACACTACTGTACTACTGCATCACTGTCACTATACACCACTGTACTGGATCTATAGGCTCCACTGTATCACTCCACTTGTGCAGGAGCAGACATACACAACAACCACAACCTCCTGCTGGGCCACACGGCATctcagacacacatacacacacagcttctACAGTCTGAGCTGTAGtggtcagacagacagacacagttaGTCTGAggagcacacagacagacagacagtggaaGACATACTAAACAGAGAAAAGCAGAGGAAAGTAGAAAGAAGAACagtgagagagcaagagacaaggagaaaatatgaaaataaaagagaaatagaGGGTGGATGTGCTCCTGGCGGTTTGCGGACCGTTGTTGTGGGTGCTGTCCACAGTGACGGTGATCAGTAACAGGGAAGGTCTCCACACCTATCTCAGCCTGAGTCACCGCTGACCCTGTTTCTCAGCGTGACAGCTCCAGGGCAGCTCTGGTTATTCCAGGGGGGTTTGGGGCAGTTTTTGATGGGCAGATGTTTGGGGAGAGTGTCAGGGCTAGATACGAGGTCATTCCAGGGTGGAAGGTCAGTATATTCCAGTGATTGGGTCCATGTACTGCAAGGAGGGGCTGAGTGTAATCCATGGAGGGGTTCAGAGTTAttcagagaggggggggggggcagtgtatTCCAGGGAGAGGGTCCATGTAATGCAAAGAGGGGGAGATTGTATCTTAGGGAAAGGGCTAGTATAATCCATTGAGGAAGTAAGTGTGTTCAAGGGAGGGGGTCAGTGTATTCCAGGGAGGGTGGAGGCAGGGGATTCCAGGGAGGGGTTCGATGTAATCCAGCGACTCACCCGGCGAGCCTCGCTCTGGAATTTGACAGCTTTCTTAGTGTCAGCCACTGCACGCTCCACGAAGCCCACTGATTGGTCCATATTGCTCTCGATCCTGTCAATCATACCGCCCTGACAGAGAgcggggagggggagggggccggGGCCGGGACCACCAGGattgagcagagagagagggagggacagagaggatGTGATAGAGAAGGAGAGGTatagagacagggagagggagggagaaagagagaggtacagagaaagggagagagagggacaggaagGCACAGAAAGGGAGATTGTGTTAGTGGAGAGAAAGTGGACACAAGTGATAATGGGACTGACACAGATAAGACCGTGTGCTGTACAGGGGGtacagtattgtacagtgtgttgtgtaggGAAAGTACAGTGTGTTGTCCAGTGTTGTGGTGCATTTGTACAGTGTGAGTACAGTACCTTGCGTGCCTTGCTCTGGTATTTGACGGCTTTCTTGGTCTGAGCCTTGGCCACCTCTATATGATCCACTGACTTAGACACCTGAGCTTCTATATTATCTACAATatcaccctgagagagagaaagaggggggggaggggggattaatactgaatgacacactgaatgacacactgaatgacacactgaaTGACACAAGGTGAGTATTGGTGTGTAAGACAGAAGAGCTCTTACCTTGTCTCTGGCTCTCCTCAGAATGCAGTGAGCAGTGAGGGGAGAGGTCAGGGTTAAAAACATTCTTACAAAAATTGCCGAGagagacacccacacacaactAACCGCTAACCCACACACAAGTAACCACCAAACGGACACGCAGAGGGACACGTCCACGGACACGAAGCCCAGAGTGGTCAGTCAGTACCTGGTTCTCCACAAGCATGGCAATGTCCACAAACATGTCGTGCAGCTCTTTGATGCTGCTCTCCAGACGCACAATGTCTTTGTGTCGAGACTCGATCTCATTCAGGGCCTGCTTAGAGATACTGGAATCCACTATCCAGAGGTGAAGATGGCTGGGTTTCCACTCTCCAGcatctcctccagctcctcatCTGTTGTGTTCTTAccagctagagagagagagagagagggttaatatagtatagtacactcacacagactcacTAACTGACTGGTTCACACACTGGCCAGTCCAGTGTGCACTCACTGATCTCCAGCTGTCTCTGGATGCGGCCCTTGCTCCTCTCTCGGAAGTCCACCTGGGCCTCATTGTACTTGGTCATCACCTCCACAAACTTCCTGGACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123692 lncRNA upstream 118756 14126621 ~ 14152625 (+) True G99093
TU123691 lncRNA upstream 134706 14126621 ~ 14136675 (+) False G99093
TU123655 lncRNA upstream 162061 14063929 ~ 14109320 (+) True G99070
TU123661 lncRNA upstream 172244 14096945 ~ 14099137 (+) False G99074
TU123660 lncRNA upstream 173443 14096945 ~ 14097938 (+) False G99074
TU123748 lncRNA downstream 16025 14441491 ~ 14444142 (+) True G99137
TU123873 lncRNA downstream 67548 14493014 ~ 14495627 (+) True G99229
TU123884 lncRNA downstream 121531 14546997 ~ 14550448 (+) True G99232
TU123914 lncRNA downstream 192785 14618251 ~ 14618610 (+) True G99259
TU124030 lncRNA downstream 350632 14776098 ~ 14776461 (+) True G99325
AMCG00015625 mRNA upstream 36717 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015619 mRNA upstream 124411 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015618 mRNA upstream 158456 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015617 mRNA upstream 175114 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015616 mRNA upstream 278292 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015629 mRNA downstream 28051 14453517 ~ 14456893 (+) True AMCG00015629
AMCG00015630 mRNA downstream 37194 14462660 ~ 14467684 (+) True AMCG00015630
AMCG00015636 mRNA downstream 76288 14501754 ~ 14502659 (+) True AMCG00015636
AMCG00015639 mRNA downstream 96931 14522397 ~ 14538432 (+) True AMCG00015639
AMCG00015637 mRNA downstream 132283 14557749 ~ 14573035 (+) True AMCG00015637
TU123659 other upstream 170526 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 658089 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 678011 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 824102 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 835679 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 623457 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 888570 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1371484 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 1705578 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2672993 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile