RNA id: TU123851


Basic Information

Item Value
RNA id TU123851
length 1656
RNA type TUCP
GC content 0.52
exon number 5
gene id G99213
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14447711 ~ 14456695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTGGGAGAAGATTTTaatgaatggttttatttatttatttaagattataTTTCATTTCTACAAGTCTGGATTTTTGTACAGGGTTCAGGAGTCCGCCTGGGAGAACTCAGTGGAGATTCCCTACAGGCTCAGCATtgagcactgacacacacagcctgtGGGGGCGGGACAGTGACAAAGGGGGAGCGAGGGAGCAAGGGAGggacagagtgacagagagagggagcgagggagagagtgagagagagagtagttTGTTCACAATGAGGAATTTTTAGATCCCAGTGAATTGAACCGAGTCAAGCCaggtgtgtgcgtctgtctgtgagtgtctcCTAGTGATTGCTGGTGTACACCTTCAGCTTGCCTctccatagaaatcaatggaTAGAAACTGGTCCCAAAGTTTTCACACACAAGACCaccaaccccaccccaccccaccctcacTCGGTCCCTCGCTTGCTCAGTCCAGTCGGCTGGGATGTGTGCAGGCCCTCTCTCTGGGTCAGTGTTTCAGCAGGAGCTCCAGGTGCTGAGGACAGTGGACAGTTTCCTTGCCACCAATGGGCTACAAACACTAGCCGATGGCTTAGGGAACGGGAATCGACTAAACAAACGCAGAGAATGACATCGCCGTCCAGGGCTAGGAGAGGACCACCACCATCTGGACCcgtacacccccccccccagcatgTGTCTATCTGTACAGGTAGTCAGCCTGTATGTTGGCTGCGATCTCGGCCTCCCACTTGTCTCCATTGTTCAGCAGCTTCTCCTTGTTGTAGAGAAGCTCCTCGTGGGTCTCTGTGGAGAACTCGAAATTTgggcctccacAATGGCATCCACGGGGCAGGCCTCCTGGCAGAAGCCGCAGTAGATACACTTGGTCATGTCGATGTCGTAGCGCGTCGTCCGCCGGCTGCCATCAGAGCGCGGCTCGGCCTCGATGGTGATCGcctgagGGGACACACTGCCTCACACAGCTTGCAGGCGATGCAGCGCTCCTCTCCGGACGGGTACCGGCGCAGTGCATGCTCCCCCCTGAACCGAGGGCTCAGGGGCCCCTTCTCAAATGGGTAGTTAATGGTGGCCGGCTCCCTGAATAGGTAACTGAGAGTCATCCCCAACcctgagggagagaaagggggttaatacagtacagcacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagcacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagcacagacacactgactgactggacactacagtacattaacactgcactgagagagagagagagggttaatacagtacaaactggacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactgactggacactacagtacattaacactgcactgagagg

Function

GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123834 lncRNA downstream 126995 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 126995 14319467 ~ 14320716 (-) True AMCG00015628
TU123777 lncRNA downstream 228927 14062419 ~ 14218784 (-) True G99162
TU123859 lncRNA upstream 1770 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 46069 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 81976 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 86266 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 92776 14549471 ~ 14624486 (-) True G99289
AMCG00015632 mRNA downstream 1693 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015634 mRNA downstream 3553 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015631 mRNA downstream 14004 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015633 mRNA downstream 32173 14395765 ~ 14415538 (-) True AMCG00015633
AMCG00015626 mRNA downstream 58972 14376755 ~ 14388739 (-) True AMCG00015626
AMCG00015635 mRNA upstream 11666 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015640 mRNA upstream 46809 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015641 mRNA upstream 60763 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015642 mRNA upstream 115283 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015644 mRNA upstream 215516 14672211 ~ 14675992 (-) True AMCG00015644
TU123831 other downstream 112779 14326167 ~ 14334932 (-) False AMCG00015628
TU123617 other downstream 582973 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 582973 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 582973 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 708592 13671315 ~ 13739119 (-) True AMCG00015606
TU123958 other upstream 24499 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 113956 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 117671 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 233692 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 234175 14690870 ~ 14695370 (-) True AMCG00015645

Expression Profile