RNA id: TU124052



Basic Information


Item Value
RNA id TU124052
length 320
lncRNA type intronic
GC content 0.47
exon number 1
gene id G99342
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14879756 ~ 14880075 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aagtgtagaattgagaacaagggcagtaatgttcagactgtacaatgcactagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagagacagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcaaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU124030 lncRNA upstream 103295 14776098 ~ 14776461 (+) True G99325
TU123914 lncRNA upstream 261146 14618251 ~ 14618610 (+) True G99259
TU123884 lncRNA upstream 329308 14546997 ~ 14550448 (+) True G99232
TU123873 lncRNA upstream 384129 14493014 ~ 14495627 (+) True G99229
TU123762 lncRNA upstream 431716 14409762 ~ 14448040 (+) True G99149
TU124060 lncRNA downstream 25532 14905607 ~ 14907243 (+) True G99350
TU124061 lncRNA downstream 25532 14905607 ~ 14907243 (+) False G99350
TU124058 lncRNA downstream 172322 15052397 ~ 15161865 (+) True G99348
TU124090 lncRNA downstream 281983 15162058 ~ 15163883 (+) False AMCG00015657
TU124057 lncRNA downstream 300775 15180850 ~ 15181975 (+) False AMCG00015657
AMCG00015646 mRNA upstream 72358 14720074 ~ 14807398 (+) True AMCG00015646
AMCG00015643 mRNA upstream 263000 14609879 ~ 14616756 (+) True AMCG00015643
AMCG00015638 mRNA upstream 297406 14580949 ~ 14582350 (+) True AMCG00015638
AMCG00015637 mRNA upstream 306721 14557749 ~ 14573035 (+) True AMCG00015637
AMCG00015639 mRNA upstream 341324 14522397 ~ 14538432 (+) True AMCG00015639
AMCG00015653 mRNA downstream 86528 14966603 ~ 14968812 (+) True AMCG00015653
AMCG00015650 mRNA downstream 112805 14992880 ~ 15009509 (+) True AMCG00015650
AMCG00015654 mRNA downstream 257971 15138046 ~ 15156253 (+) True AMCG00015654
AMCG00015657 mRNA downstream 282866 15162941 ~ 15200978 (+) True AMCG00015657
AMCG00015656 mRNA downstream 325515 15205590 ~ 15214257 (+) True AMCG00015656
TU123659 other upstream 778901 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 1266464 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 1286386 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 1432477 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 1444054 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 168848 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 433961 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 916875 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 1250969 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2218384 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile