RNA id: TU124222


Basic Information

Item Value
RNA id TU124222
length 379
RNA type TUCP
GC content 0.42
exon number 1
gene id G99475
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15314036 ~ 15314414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatattcagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacacgcaggtaacaaaaatgtccactataattacactatgggaggaaaagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacagagtgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtaatgttcagactgtacaatgcactagttagagctcatctggatactgtgtacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124108 lncRNA upstream 42379 15248249 ~ 15271657 (+) True G99384
TU124096 lncRNA upstream 61322 15191669 ~ 15252714 (+) True G99375
TU124097 lncRNA upstream 63134 15191669 ~ 15250902 (+) False G99375
TU124057 lncRNA upstream 132061 15180850 ~ 15181975 (+) False AMCG00015657
TU124090 lncRNA upstream 150153 15162058 ~ 15163883 (+) False AMCG00015657
TU124361 lncRNA downstream 588037 15902451 ~ 15959723 (+) True G99566
TU124476 lncRNA downstream 895029 16209443 ~ 16209643 (+) True G99644
TU124494 lncRNA downstream 981411 16295825 ~ 16296030 (+) True G99662
TU124530 lncRNA downstream 1125898 16440312 ~ 16457842 (+) True AMCG00015682
TU124536 lncRNA downstream 1144446 16458860 ~ 16504418 (+) True G99697
AMCG00015661 mRNA upstream 44191 15260041 ~ 15269845 (+) True AMCG00015661
AMCG00015656 mRNA upstream 99779 15205590 ~ 15214257 (+) True AMCG00015656
AMCG00015657 mRNA upstream 113058 15162941 ~ 15200978 (+) True AMCG00015657
AMCG00015654 mRNA upstream 157783 15138046 ~ 15156253 (+) True AMCG00015654
AMCG00015650 mRNA upstream 304527 14992880 ~ 15009509 (+) True AMCG00015650
AMCG00015665 mRNA downstream 396778 15711192 ~ 15728592 (+) True AMCG00015665
AMCG00015668 mRNA downstream 514257 15828671 ~ 15902686 (+) True AMCG00015668
AMCG00015673 mRNA downstream 645403 15959817 ~ 15961407 (+) True AMCG00015673
AMCG00015671 mRNA downstream 647945 15962359 ~ 15986250 (+) True AMCG00015671
AMCG00015670 mRNA downstream 694622 16009036 ~ 16047634 (+) True AMCG00015670
TU124082 other upstream 134186 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 1213181 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 1700744 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 1720666 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 1866757 13445525 ~ 13447279 (+) True G98884
TU124310 other downstream 482536 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 816630 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 1784045 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 3005642 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 3430473 18744887 ~ 18771966 (+) True AMCG00015725

Expression Profile