RNA id: TU124310


Basic Information

Item Value
RNA id TU124310
length 2395
RNA type TUCP
GC content 0.47
exon number 3
gene id G99541
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15796950 ~ 15801634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacaagttgacacaagtgttgccaaagcatttccAGATACAGTATAGGGaggaaattaatacaataaaataaaaaatagcccaatttccatttgtgtcccaggaTCTGTGCCGcgatctttcttgaagtgtggtgcccagaactgtacacaattatattttgttaatatacataatacatattacttacattaataaataataaagcatcaCTCACCCAGTGGGATATCATGGATTGCTTGTCCTGAATTTGTTTTCTCCAGCGAGGTGTTATGGGTGAGATGCTGCCAATGTGGAGTTTGTCCTGTATTTATTAGTCTGTATTGCTGCCATGACAGAAAATACCCTTTCAACTACAAATGATCTTGTAAATGGCAGAAAATGCTTCATGGGTTTCTGCTCAATGATAGGATATTGACATTTAACCAGCATCTAGAATTGTGACAGACAGCAGTTTGAGAACACTGCTGACAGAACAGTGCCATCTTGTGTTagagcaccacacacacacatgcaatcactgacacacacacccaggttGACACTTCATAatataaggttttatttttcattgattcTCTTGTATCTTTGTGTGTAATCATTGCCCAAAGGTACACAGCAAGTACGGGGAGTCTGCTAAAttcaacacacactcacacactggaGAAATCAGTGACACAATCCAGAACCCTCCACTACTTCCCCAACACTAACTCCCAAAATACCTGCCCCTCCTCTCTAACCCCCATGGAACTGCcccagagagaaagagaaggagggagagggagagtgagtgagtgtgggtAAAGGGGTATTTTAGTATTGATTTAGAATTTGAATTTTTAGTGAATAAAATATGAGGGGTATTTACTTATGATACAAGGTGCTGGGACAATTGCTGAGATGGTGTATGTTTGATCTGAAATCATCTTGGGCAGagggagacacacagggagggcgagcgagagacagagagcgtAGTGTTTCTGAGATTTTTGGCAGGCAGTGAGAtcgacagagacagacacacaggggcTGAAGatgctatatgtgtgtgtgtgtgtatttgtcagtgtctgtgtgtcactgtgtgtgtgtgtgtgggtctgtgtgccAACTCAGAAGATATCAGGACAGCTACTCCAGTCCTGTGGCTCCTTGGCCTTGGCCTCCCAGTAGCCCCCCTTGTAGATGTGCGTTTCTTCTTGGGTCACTGGGTCCTTGCAGCGCTCGAACCACATGGCCTTGTAGTTGTCCACATGGGggGCTTTTCAGAGCTGTTCCAGTGGGACCCTCCTCTGAGTCTGCTGAGAGGAGAAAATTAaccaaattaatcaattaataaaacagctgccatggaaaacagaaatgagTGTGCATGGAGGGGAAGAAAGGGGGTGAGATCTATACCCATCTTTAGATCAATCTATACCTATAGAGTGCAACGTGACCAGAGACGCAAACCCAAGCACTCTACAGAGCTAACACCACAGccgaagaggaggaggaggagggtggcaCAGGATGAGGGGCTGAAATGTTATGGATCAGGTATAGAAACATTTTCAGGCAGAGTgggggtgagagggagagagagactgggaaagggagaaagagggagaagcagggaaagagaagaaaaggggATGAATGAAAGCAGGGGtgatggagagagggggggagggacaGATGGAGGGAGGGTACTTGCTTGTCAACAGTGTCTCTGCAGGGCTCTCCACTGGCAAGGCTTGAAAGACAGGAGATGAAATGAGAAGatgtaacaaacaaaaatgacaacagaGAACGAACGAGTGGAGGGCCATAAATGAGATGCAGAACAGCAGACCGGGGAGGTAATCGGAAAACAAGTGGAAAACGACAACACAGcgccttcctcctcctccctctttctctgtcagAGGTTGCATAgtcaatgtactgtagtgtctcaGTCAGTCATACATAATACTTTGACAGTTATCGtataaatattcaatatgaAAAGAATCACTGATAAGTTTACGTCACAGCGCAGCAAAAGTTGAAAATACTTGATCTCCTGTGCGCCGCTCTGCTTTGCCACGTCTCAGCTCCGCCCCAGTGTGAAAACCCCTTTAGTCAGTGAGTCAGTatatcagtctgtgtgtcaatCAGTGAATAAATGTATTAGGCCTTGCCTCTCTCCTCACCCTCCTCCACCGCACGGACAGCTtcactctccctcttcctccgcACGCTCCTCTGCTTCTCCTCCAGACGCTGTTTCTCGGCATTGGCCTCGTCCCAGCGGCCCTGCTCCATCAGCCGCTGGTCCGGCCGTGCCCGGCTGTCTGTGGGTGCCacgccctcctcctcctcattcaGGGTCAGCGCCAGCTCGGAGAAAAAGTACAT

Function

GO: NA

KEGG:

id description
ko03060 Protein export

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124108 lncRNA upstream 525293 15248249 ~ 15271657 (+) True G99384
TU124096 lncRNA upstream 544236 15191669 ~ 15252714 (+) True G99375
TU124097 lncRNA upstream 546048 15191669 ~ 15250902 (+) False G99375
TU124057 lncRNA upstream 614975 15180850 ~ 15181975 (+) False AMCG00015657
TU124090 lncRNA upstream 633067 15162058 ~ 15163883 (+) False AMCG00015657
TU124361 lncRNA downstream 100817 15902451 ~ 15959723 (+) True G99566
TU124476 lncRNA downstream 407809 16209443 ~ 16209643 (+) True G99644
TU124494 lncRNA downstream 494191 16295825 ~ 16296030 (+) True G99662
TU124530 lncRNA downstream 638678 16440312 ~ 16457842 (+) True AMCG00015682
TU124536 lncRNA downstream 657226 16458860 ~ 16504418 (+) True G99697
AMCG00015665 mRNA upstream 68358 15711192 ~ 15728592 (+) True AMCG00015665
AMCG00015663 mRNA upstream 448260 15313553 ~ 15348690 (+) True AMCG00015663
AMCG00015661 mRNA upstream 527105 15260041 ~ 15269845 (+) True AMCG00015661
AMCG00015656 mRNA upstream 582693 15205590 ~ 15214257 (+) True AMCG00015656
AMCG00015657 mRNA upstream 595972 15162941 ~ 15200978 (+) True AMCG00015657
AMCG00015668 mRNA downstream 27037 15828671 ~ 15902686 (+) True AMCG00015668
AMCG00015673 mRNA downstream 158183 15959817 ~ 15961407 (+) True AMCG00015673
AMCG00015671 mRNA downstream 160725 15962359 ~ 15986250 (+) True AMCG00015671
AMCG00015670 mRNA downstream 207402 16009036 ~ 16047634 (+) True AMCG00015670
AMCG00015669 mRNA downstream 252707 16054341 ~ 16057795 (+) True AMCG00015669
TU124222 other upstream 482536 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 617100 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 1696095 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 2183658 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 2203580 13576196 ~ 13593370 (+) True AMCG00015602
TU124453 other downstream 329410 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 1296825 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 2518422 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2943253 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 4465773 20267407 ~ 20268285 (+) True G100338

Expression Profile