RNA id: TU124453


Basic Information

Item Value
RNA id TU124453
length 344
RNA type TUCP
GC content 0.58
exon number 1
gene id G99624
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16131044 ~ 16131387 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acatcaccatgctgacgtgcacctgcagattcttcctgagcaacatacgccggatccgtcccttcctcaccgactactcaactcagctactcgtccagtcactgttcctctcccgcctggactactgcaactccctcctggccggcctgcctgcatccactacccacccaatccagctcatccagaactctgcggctcgtctggtattctctctgccacgattcgcacacgctactccactgctccgctccctccactggctcccgatagcggcacgcattcagttcaagactttgaccctcacctaccgctgtcttgaccacactgcaccaagctaccttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124361 lncRNA upstream 171321 15902451 ~ 15959723 (+) True G99566
TU124108 lncRNA upstream 859387 15248249 ~ 15271657 (+) True G99384
TU124096 lncRNA upstream 878330 15191669 ~ 15252714 (+) True G99375
TU124097 lncRNA upstream 880142 15191669 ~ 15250902 (+) False G99375
TU124057 lncRNA upstream 949069 15180850 ~ 15181975 (+) False AMCG00015657
TU124476 lncRNA downstream 78056 16209443 ~ 16209643 (+) True G99644
TU124494 lncRNA downstream 164438 16295825 ~ 16296030 (+) True G99662
TU124530 lncRNA downstream 308925 16440312 ~ 16457842 (+) True AMCG00015682
TU124536 lncRNA downstream 327473 16458860 ~ 16504418 (+) True G99697
TU124537 lncRNA downstream 327473 16458860 ~ 16504418 (+) False G99697
AMCG00015674 mRNA upstream 18506 16110567 ~ 16112538 (+) True AMCG00015674
AMCG00015675 mRNA upstream 64527 16060344 ~ 16066517 (+) True AMCG00015675
AMCG00015669 mRNA upstream 73249 16054341 ~ 16057795 (+) True AMCG00015669
AMCG00015670 mRNA upstream 83410 16009036 ~ 16047634 (+) True AMCG00015670
AMCG00015671 mRNA upstream 144794 15962359 ~ 15986250 (+) True AMCG00015671
AMCG00015679 mRNA downstream 289009 16420396 ~ 16433377 (+) True AMCG00015679
AMCG00015682 mRNA downstream 302056 16433443 ~ 16440435 (+) False AMCG00015682
AMCG00015678 mRNA downstream 322597 16453984 ~ 16461379 (+) True AMCG00015678
AMCG00015684 mRNA downstream 349961 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015687 mRNA downstream 363305 16494692 ~ 16498524 (+) False AMCG00015687
TU124310 other upstream 329410 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 816630 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 951194 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2030189 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 2517752 13583970 ~ 13613292 (+) False AMCG00015602
TU124723 other downstream 967072 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 2188669 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2613500 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 4136020 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6548823 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile