RNA id: TU124642



Basic Information


Item Value
RNA id TU124642
length 941
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G99771
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16598479 ~ 16599419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gctcccattcgccctgcacctcccaacttggttttctgcttccctctgctcctcATACAAACCCCTCACtgactctctctcactgtgaagttttgtcagtgttaacTACATCTGCAAGCAGTTGCTCCCTGTGCCTTGGTAAATCCTTGACCCCCTGCTTTACCTCCTGACCCTGGATCACTGGGTTTTAGACGTACAAACCAATCAACACAGTCAATGAACCACTTATCCACGactttaagaaaataagtgGCAGTTCCCGGACTGAGAAAGCCAGGGAATTCCCCCAAAACATTGTCGGCGGGCAATGACATGAAACCCAGAACCAGATTAAAACACAGATGAAGGGCACgctgtttgttgtgtgtgaatttaaatacaattttttccTATTAGTTTTCTGAGGCAGCCAATGGGTTTTAACTTGCTGTGTGTTAGGTGAGTTTCCTGCCTGAACTATCGTTTTGCTTAATAacgcaaatgtttttttttggcatttggAGCCAAAACCACTTAGGGTTTGAAAAAGGCACAAACATGCTGAGCATAACAATATTATAATAGCTCCTAcctttaattaagtttttaaatcaaataacagATTTCAGCagctttaaaacatattcagGAGAATTTACAATTCATTGAATATTGTAAATGATAATAAATCACAAAGGTTGTATAACACTTATTATGTTCATTCAGTAGGGTATACTATGGAATGTTTTAGCATACCAGGACAATGTTTAAATCAAAGAGTAGGATAAAAGGTTTGGAGATAATTAGATACACCTCTACCCCGATATAACGCAGTCCTCAGTATCCCAAACAATCTTACTGTGTTATAGGTGAAAGTGTTATATCAAACTTGCATTTCCATTATTAATAGacagcacaaaaaataaaaaaatgttggaaCACAGTGAATGCAGTAAATAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU124614 lncRNA upstream 59098 16538237 ~ 16539381 (+) True G99745
TU124611 lncRNA upstream 62147 16536085 ~ 16536332 (+) True G99742
TU124537 lncRNA upstream 94061 16458860 ~ 16504418 (+) False G99697
TU124643 lncRNA downstream 782 16600201 ~ 16602947 (+) True G99772
TU124645 lncRNA downstream 6337 16605756 ~ 16605979 (+) True G99774
TU124652 lncRNA downstream 50730 16650149 ~ 16652102 (+) True G99780
TU124678 lncRNA downstream 271201 16870620 ~ 16871120 (+) True G99803
TU124710 lncRNA downstream 405993 17005412 ~ 17006477 (+) True G99833
AMCG00015686 mRNA upstream 23293 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015692 mRNA upstream 29228 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015688 mRNA upstream 75598 16516896 ~ 16522881 (+) True AMCG00015688
AMCG00015689 mRNA upstream 86189 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015685 mRNA upstream 95696 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015699 mRNA downstream 80327 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015698 mRNA downstream 128683 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015700 mRNA downstream 235607 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015701 mRNA downstream 372946 16972365 ~ 16993281 (+) True AMCG00015701
AMCG00015703 mRNA downstream 504252 17103671 ~ 17131775 (+) True AMCG00015703
TU124453 other upstream 467092 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 796845 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1284065 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1418629 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2497624 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 499040 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1720637 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2145468 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3667988 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6080791 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile