RNA id: TU124643


Basic Information

Item Value
RNA id TU124643
length 2747
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G99772
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16600201 ~ 16602947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGCTGAACTGAATATTTCCTTTGCAGAAATCATAAAGCCTTAACACAgaattgttaaatatttgccACACTTTTCACAAGGGAAAATTTAcagggttttaaaaaaaaagtttttttttgccatGATGTAGTGACACTATGATTTTATGGCTAGATGCAACAGTAAATATGTTAAAAACCATaagtaaacaatattttttcatcACAGAGAAAAATATTCTTTCATATTCTATTTCCACATAGGTTTTAGAGCTTTTTCTGTAGTTAACTTGCTTAAGTCTTTTGATTGGACCACTGACTTTTCAGAAAAGCTGCTGCCTTTGCTCGGGTCTCTCTTATGAGGCGGCATCTCACTGCCATTCCAGTTCTTGCTGGAGACTTTGACACTCTGCGCTCTCTTTAATGTGCCCTGGACGATATCCTCATCCTTTGGAGGGAACACACTGTTACTAGGGTTGGCTTTCACGGTTTGCTTCTTGGAGCCAGTTCTGGTTGGAGTGGCACTGTTAGAAGGCGATGAGGGGTATGAACTAGTGGTCAGGTCTTTTTTCATCCTCCTAGAGGAAGAGGCAACTGTTCCACGGGCAAAACTGGGAGTGCCAGACAAGGGCTTGCTGCTATGAGTGGGAGTCTGGCAGCTGCTCCCTTCAGCTGCTCCTTGTGCCTGAGCCAGGGCTCGCATAGTGGAACGGCACATCTTCTCCTCTGGCTTGGGCTTAGGAATGTTACGTACGGGTTTGGCACTGGGCTTCCTGATTGAGTGGGTGCGTGGGTTTTGTTCTCTAAGCCAATTGTTACTAGTACTGGATGGTGTGCCCTTGTGAACTTTTTGGTTCTCTGCAGGAACGTTAGAGCTTTGAGAGGTACTTGTGTGGTATTCAGTCTTTCTCCCTGGATTGCTCTGATCCTGGTGTGGATGCCtcagttctttatttttcttttcataggCTGATGACTCTGTTGTCTTTACAGAGTTGCCAGACCTGCTCTGTCTGGATATAGGCATCACTTTTCGCATTTTTTGATTTTCTGTGGCAGGTAATGTTCTTACACCATGGGCAGTTCCACTATTTCGAGTACCTGGTATTTTTGAAGATTGCTTCGATTTCCTAGGCCCAGTTTTTTTACTGTTGACCTGTAccattttctcatttttcttttgttttgttgtcccACAGCTATCACAAGCTTTCTCCTCTGTGGTGGCAGACTGAGTAACAGAAACCGACTCCTCATTAGTGGATTCTGATTCCAAATTAGAAGAAATTGAACTTGGGTCTTTGAGATTGTCCATACTAGTATGCACATTTTGGTTTCCAAAGTTATTGTCTTCCTTAAAAACAGGAAGGTTGTCATGGATTTGAGAGTAGTCCAAGGATGTAGAATGGTCAGTCTCTGTACAATCCATTATGTAAAGTATAGGTTTCTTGTTTGTTGCAGAGTCATCTAAAGGAAGATGTATATCACACGTTGAGGAAATAGTGCTAATGTCCCCTTCCTCTTCATTTTGAGAAGAGATTGtaaactgtaaagattccatTTTACAATCAGATTCTGTTCTGgaatcattttctgttttggagCTCTTAGAAGAGGGAGGGGTATCCATATCTAAAATTTCAGGACTTTTTAGGGTATCTTTTTCCATCTTCAAATTATCCAAACAAACATCTCCCTGGTTCACTAAGTacatactgttattattaataggaGTAATGAGACTGAATACCTGAAGTCCAGGGACCAACGTGTGCCTTGACACACTGACATTCATTTGCTCATGACTGGTACCGTTAgtcttttcaaaaacatttttgtagtggttattattatttatcccaCCACTTTCTGAAACAACAGTAGTATTGCCATTAATGACATGTGGATCTTCCATTATATTCAAACCAATTTTAAACTCAACCACAGGAGTTTGTGAAAAATCTTCCTGGTCTGCATTCAATGTGACACTGTCTTTCCTGTCTAAGTTGTGGCATTTCACACCAAGTTCCTGATTGTCATTTGGGGAATCCATCCATGGGTTGGTTTTCCTGGAGTGGCACCTAGAGATCCTGGGAAGGCTGTTAAACTTGGTGGAGTCCTCTGACCTCAAGCCCCCAAGGAAGCTGCAGAGCTCTCGGTCAGCCATGGCAGCCACTGAGTGCCTGGAGCGCTTTACACTGGAAGAGCGGGTCAGGGGGCTGTGGGGTTTGTGCTGAAAGAAGTCCAGGAGGCCCTCCTTGGTTAGCATCTCCACATCATTCTCACTGCTACTACGACCAAAACCCCTGCCTTGATCCCCACCTGCCCAAGAATGCCTCTTCTCCTCCAGTTCCCGAAGCCGCTTCTGCCTGGCAGCCTCCTTCAGGTCCCTCTCAAGATTATCCTGCAAGGCAAAAAGCACAGGGAAAagcaaaaagtaattttaagaGATATAACTGAGCTGGGTATCatgtaaagacatttaaaaatccaGTGGTTGACTGATATTCTGTGATAGAGATGTTTGTCATAGCATGTCTCTGTGTCAGCTTGAGAGCTCATATTCACCAACCAATTCTTAAACATAGTCTCTGATTCCATTCCAAGAGTAATCTCTGaccgtttttttttcttgtggtggaaaaaaacaaatcaattaaaactaaataccTGAAGTCTTCATTAGATAGAGTGGTGAGAGAAAGTTTGTAAACCCTTTATCTGTGTACCTGCATTAATTTGACCTACAATGTGATCTGATCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124642 lncRNA upstream 782 16598479 ~ 16599419 (+) True G99771
TU124614 lncRNA upstream 60820 16538237 ~ 16539381 (+) True G99745
TU124611 lncRNA upstream 63869 16536085 ~ 16536332 (+) True G99742
TU124539 lncRNA upstream 95783 16458860 ~ 16504418 (+) False G99697
TU124645 lncRNA downstream 2809 16605756 ~ 16605979 (+) True G99774
TU124652 lncRNA downstream 47202 16650149 ~ 16652102 (+) True G99780
TU124678 lncRNA downstream 267673 16870620 ~ 16871120 (+) True G99803
TU124710 lncRNA downstream 402465 17005412 ~ 17006477 (+) True G99833
TU124713 lncRNA downstream 409715 17012662 ~ 17013041 (+) True G99836
AMCG00015686 mRNA upstream 25015 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015692 mRNA upstream 30950 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015688 mRNA upstream 77320 16516896 ~ 16522881 (+) True AMCG00015688
AMCG00015689 mRNA upstream 87911 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015685 mRNA upstream 97418 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015699 mRNA downstream 76799 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015698 mRNA downstream 125155 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015700 mRNA downstream 232079 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015701 mRNA downstream 369418 16972365 ~ 16993281 (+) True AMCG00015701
AMCG00015703 mRNA downstream 500724 17103671 ~ 17131775 (+) True AMCG00015703
TU124453 other upstream 468814 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 798567 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1285787 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1420351 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2499346 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 495512 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1717109 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2141940 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3664460 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6077263 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile