RNA id: TU124678


Basic Information

Item Value
RNA id TU124678
length 501
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G99803
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16870620 ~ 16871120 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacactacaaatatataaactgacaaaaatatatataaagaaacaaacaagtgtAAATTGCAAATAGATGCAGGTCAGTCTTAATGTTAAGAGTTTTAAACATGACAGTTTTCTTGCTGTGAACTGACTTGGCTTAACAGTTATGGTTTATGAATTGAAATGCACCACAggcaaaaaaaaacctaaattaatAGTCGCCAAATGATTTGCCTCATTCTCCAAGAGCCACACAACTCAAGCTGAACTGTGAAAGTGGTATaacactgtatattaaacaatcttattctttctctttctctttttttttttctgttaatttataGTCTGGTTTGAGAAATCAGATGatgcaggttttatttttcagttcgTGTAACTGCCTGACGTAACAGACAGAAAAACCTTAAAGGGATTGTGTCTATTGTTTGATTCACTtagaatttttattttcttataacttaagtgcaataaaatgtggttttttttttcatttcaag

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00620 Pyruvate metabolism
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124652 lncRNA upstream 218518 16650149 ~ 16652102 (+) True G99780
TU124645 lncRNA upstream 264641 16605756 ~ 16605979 (+) True G99774
TU124643 lncRNA upstream 267673 16600201 ~ 16602947 (+) True G99772
TU124642 lncRNA upstream 271201 16598479 ~ 16599419 (+) True G99771
TU124614 lncRNA upstream 331239 16538237 ~ 16539381 (+) True G99745
TU124710 lncRNA downstream 134292 17005412 ~ 17006477 (+) True G99833
TU124713 lncRNA downstream 141542 17012662 ~ 17013041 (+) True G99836
TU124716 lncRNA downstream 161309 17032429 ~ 17032729 (+) True G99839
TU124717 lncRNA downstream 196041 17067161 ~ 17067590 (+) True G99840
TU124719 lncRNA downstream 199463 17070583 ~ 17071054 (+) True G99842
AMCG00015700 mRNA upstream 261 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015698 mRNA upstream 82111 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015699 mRNA upstream 159818 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015686 mRNA upstream 295434 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015692 mRNA upstream 301369 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015701 mRNA downstream 101245 16972365 ~ 16993281 (+) True AMCG00015701
AMCG00015703 mRNA downstream 232551 17103671 ~ 17131775 (+) True AMCG00015703
AMCG00015706 mRNA downstream 282155 17153275 ~ 17153478 (+) True AMCG00015706
AMCG00015705 mRNA downstream 315718 17186838 ~ 17235784 (+) True AMCG00015705
AMCG00015708 mRNA downstream 410559 17281679 ~ 17300446 (+) True AMCG00015708
TU124453 other upstream 739233 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 1068986 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1556206 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1690770 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2769765 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 227339 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1448936 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 1873767 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3396287 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 5809090 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile