RNA id: TU124914


Basic Information

Item Value
RNA id TU124914
length 593
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G100005
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18297039 ~ 18298304 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTACTTCCGCACTGTTTCTATGGCCACAGCGTCTCGGTGCTACACGCATGCGCGCTGGGGGGCGAGTTGACTACAAACTTAAATCCCAAGAGATGCATTTGGAAATAAACTCCAAAATACAGTAGAAATTAGACAAAGCGATACACTgataatattaacaatactaAAAAGTTAAGCCGAGGAAGGCAAACTTGTTAAACTGTTTTGGagtgtttgttgtttataaACTGTTTTGGAGAGTTTGCGGTGTGGACTCTGAAATTAAAATGAGCACTGAAGCTGTGCCACGACAAAACGAGCCGCTCCTccccaatataataataaaccccAAGAGCTTTTCAACTTCCCAGCAGCAGCGTCAGCACCAGGATGCATGGCACAGTAAACCAAGCACTGCAGCTTTGCCAAGACAAAACACGCCATTCCTCCCCAATATAATAAACCTAACTTCCCAGCAGCATCAGCACCAAAATGCACCACACAGGTGAGATGAGCTCTGCTTCTGCATACAtgattgctgttgttttacGGAGTTACAGATTCAATAGCTTTCAAAGGCCTTAAAAACCACAACaaagaaacattcaaaaat

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0043226 organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03030 DNA replication

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124830 lncRNA upstream 340409 17954485 ~ 17956630 (+) True G99932
TU124832 lncRNA upstream 363711 17932999 ~ 17933328 (+) True G99934
TU124831 lncRNA upstream 459139 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 696131 17600703 ~ 17600908 (+) True G99915
TU124755 lncRNA upstream 831525 17450084 ~ 17465514 (+) True G99867
TU124964 lncRNA downstream 330018 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA downstream 330018 18628322 ~ 18629571 (+) True G100046
TU124967 lncRNA downstream 330018 18628322 ~ 18630144 (+) False G100046
TU125015 lncRNA downstream 459758 18758062 ~ 18844449 (+) True G100082
TU125101 lncRNA downstream 822524 19120828 ~ 19125504 (+) True G100143
AMCG00015715 mRNA upstream 228364 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 343970 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 377557 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 849378 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015710 mRNA upstream 911714 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015726 mRNA downstream 154073 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 379514 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 391434 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 471822 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 507785 18806089 ~ 18828015 (+) True AMCG00015731
TU124723 other upstream 1165290 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2165652 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2495405 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 2982625 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 3117189 15048923 ~ 15179850 (+) False AMCG00015657
TU124919 other downstream 21752 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 446583 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 1969103 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4381906 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6566785 24865089 ~ 24865552 (+) True G101061

Expression Profile