RNA id: TU124919


Basic Information

Item Value
RNA id TU124919
length 412
RNA type TUCP
GC content 0.51
exon number 2
gene id G100007
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18320056 ~ 18325904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAGGAATTCTCACAAACACAACATCTGCGTAGACATGCTGCGCAAGGGTTATCACAAGTCCTTCTCTGAGCTCTTCGCTCTGATCCAGAAGTGGAGTGCCTCTAGGGAGGCTGCAGGGCCTGGGTCAGCCATATGGCAGCAGGAGCCCCTTGAGGAGCAGCTTGATAAGCTGGATCAGCTTCAGCACTTCCTGACCAGGGCTGAGGCAGCCCAGAGAGCAGgtCATTATCAGGAGGTGTATGAAAGTCAGCTATCACTGGCCCACTATTTCAATCATTCAGATGACAAATGGCTGTCTGATCACTTCTTTGAGTCTAGCCTCCAAACGGCTACCCTGATCAAGATCGACGGGGGGAGAAAAGAGGCTGAAGCACATTCAGACATGGGACGTGTTTACATGGAGCAAGGT

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124914 lncRNA upstream 21752 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 363426 17954485 ~ 17956630 (+) True G99932
TU124832 lncRNA upstream 386728 17932999 ~ 17933328 (+) True G99934
TU124831 lncRNA upstream 482156 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 719148 17600703 ~ 17600908 (+) True G99915
TU124964 lncRNA downstream 302418 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA downstream 302418 18628322 ~ 18629571 (+) True G100046
TU124967 lncRNA downstream 302418 18628322 ~ 18630144 (+) False G100046
TU125015 lncRNA downstream 432158 18758062 ~ 18844449 (+) True G100082
TU125101 lncRNA downstream 794924 19120828 ~ 19125504 (+) True G100143
AMCG00015715 mRNA upstream 251381 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 366987 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 400574 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 872395 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015710 mRNA upstream 934731 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015726 mRNA downstream 126473 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 351914 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 363834 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 444222 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 480185 18806089 ~ 18828015 (+) True AMCG00015731
TU124723 other upstream 1188307 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2188669 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2518422 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3005642 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 3140206 15048923 ~ 15179850 (+) False AMCG00015657
TU125009 other downstream 418983 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 1941503 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4354306 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6539185 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7938011 26263915 ~ 26264308 (+) True G101248

Expression Profile