RNA id: TU124965



Basic Information


Item Value
RNA id TU124965
length 1219
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G100046
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18628322 ~ 18630144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


attttataaacaaattgtcatttaattaaatttcagGTGGTTACATCAACTACCAATTGAAGTTGGAAACACAAAGTAAACTCCAGGGCATTTATTCACCACTGTGCCAGACCATGAGCTGCACTGGAACACAAATCGACCCCAGCCGAGTCCGTCAATTCACATCCTCGCAGGGGACAGCTATACTGTGCAGCCCCCCGAAAGGAGCTCTGCAATGAACATTTGTTTCATTCAGTTTGTTCTTAAAATGTTCACCTCAGCTTTTGTATGGTAGATAATACTCACTTTgataacatttcaaaatcagaATGGATGATGGAGGGGGAAAGCAAGGAgaagggaaaaagaaacaaaaaaaactcccGATCGTACATGaactaaaaacataacaaaaaagtaaatcaaacaaagcaTCCATGTCACATCTTCCTCTTTTGAGTACTTATGTATAACACTGGGGAGAAAGGAAAAGACAGAATTagtcaaattatgtatttgatgCCTACACTTTAATACTTAGTATTACCAATACAGCAGAcctcaaaagcaaacaaagctgAGGTTCTGGTAAATAGCCTTATTAAAGCATTATTGttggaattaaacaaatgacaTTTAAAGTCAGTCTGTAAatcagtctttttttgttttgtttatatataatgaaaaatgataCTTTGCCAGTCAccccccccccccctttactGATGCACACTGATCTGGATTCACATTACAATGTTAGTGTCAAATTAAGTTACatacaatatgtacaatttAGCCTAGAGTCAAGATTTTTTTGGTTTACAGGTCAGTTTATTGTACCAATAGCAAAAGCAGTTTTTGCAattcatattttccatttcaattgaGAACAGATTTTACAAAAACTCTGAAGCAgactaaaatgttaaaaatacatgcagAACATACAATTGTATACCAGCAGTCACCCTAAGCTTACCAACAttttttgaattgaaaaagtcACCAGATTTTCTGTTCAAGCAAAAGTTCATGGTCTTCGTGAGCTTTTAAAATCCCTACCATTGTTTCCTCGCAGAAAAGCATCTCCATACTTGTTCTTCAGCTGCCCGTTCACATATTCTTCAGTCTGCTCCACGGCGATGTTCATGTACCCATCCAGACAAGCCAGGACACCTGAGCACAGATCATAAAAGCCCATTACAATACCTGTTCTCTAGGGTGTGTCCCAGCTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU124914 lncRNA upstream 330018 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 671692 17954485 ~ 17956630 (+) True G99932
TU124832 lncRNA upstream 694994 17932999 ~ 17933328 (+) True G99934
TU124831 lncRNA upstream 790422 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 1027414 17600703 ~ 17600908 (+) True G99915
TU125015 lncRNA downstream 128491 18758062 ~ 18844449 (+) True G100082
TU125101 lncRNA downstream 491257 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 503493 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 1083316 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 1097001 19726572 ~ 19730564 (+) True G100241
AMCG00015726 mRNA upstream 170152 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 559647 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 675253 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 708840 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 1180661 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015728 mRNA downstream 48247 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 60167 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 140555 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 176518 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015734 mRNA downstream 211075 18840646 ~ 18851278 (+) True AMCG00015734
TU124919 other upstream 302418 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1496573 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2496935 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2826688 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3313908 15314036 ~ 15314414 (+) True G99475
TU125009 other downstream 115316 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 1637836 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4050639 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6235518 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7634344 26263915 ~ 26264308 (+) True G101248

Expression Profile