RNA id: TU125015


Basic Information

Item Value
RNA id TU125015
length 1054
lncRNA type read_through
GC content 0.40
exon number 2
gene id G100082
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18758062 ~ 18844449 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacttttttccctcactgtagctaaGTGTCTgggagatttattttatttatttttgaaatgctgaTCCTTAACATCATAATACAGTAATTAGCTAATACATTCAGCTAAAACAGGACCTTacaatagtttttgttttttctttttcaattggTCACCTTCCACCTTTAATTCATCCTCTTTTCCttaatattaatgtaacaaCCCATGAGACTGCTTGGGTATACAATGGAATACTGCAATGTAAActagaaacaaagaaaaaaaattaaacaagacCAGCGTGGATACTTTTAATGAGTATGATGGTCTGATTATTACAGTTGGTCACAAAGATCAAGTATCTTCCAGATGCCAACCCACCCCTGTGCCATTCTGCAATGTGCCCAATTCAGACATCCTTCAAGTAAAGTGtaaccccctccctctcctcgaACTCCAGCCCTTGTTTTCAACAGGGCCGGGCAAATAAGCAGTTCTGTCTAGGACACTGATGAAATAGGATTGTGGGGGGATCCCATCTGAGTAAGAACTTTATCCAGCCACTGCAGAGGACCATGCAAGTGAATCTCAATCCAGCAGGGGGTGCTAGTGACATCCTGGCGGTGATACTCTGCACCCCAGCCCTGGAAatggacaacaacaacaacaacaacaacaacaacaacaaatcagaATCCACCCGTCTCAGATGAAAACAGAAGATAAATCAATAACACTATTGTGCCTTGCTCCCTTTGCACTGAGGCCAAGTTAAATGAGTGATTGGGCTGGTTCTCATTCTGTGCTGTAGAAGTTgacaataacataataaaaactgtttccAAAACCCACTGGGATGACAACAAAACCGCCCCATACTTAAATCATACAGATGTTTTTCCCCTCCCGTTGCATCATCGCATTCAAAATAACTGTCCTTGTATTACGACACTTCCAATTTGAGCAAATGTGTCATCTGCTTCAATATACTGCTCAtttttacagtgaggggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagt

Function

GO:

id name namespace
GO:0008194 UDP-glycosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124967 lncRNA upstream 127918 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 128491 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 128491 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 459758 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 801432 17954485 ~ 17956630 (+) True G99932
TU125101 lncRNA downstream 276379 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 288615 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 868438 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 882123 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 882123 19726572 ~ 19775290 (+) False G100241
AMCG00015727 mRNA upstream 41548 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015728 mRNA upstream 75254 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015726 mRNA upstream 299892 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 689387 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 804993 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015736 mRNA downstream 213613 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015737 mRNA downstream 255771 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015741 mRNA downstream 604457 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015742 mRNA downstream 795597 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015744 mRNA downstream 859974 19704423 ~ 19705094 (+) True AMCG00015744
TU124919 other upstream 432158 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1626313 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2626675 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2956428 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3443648 15314036 ~ 15314414 (+) True G99475
TU125356 other downstream 1422958 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3835761 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6020640 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7419466 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 7528704 26373153 ~ 26377699 (+) True G101275

Expression Profile