RNA id: TU125219


Basic Information

Item Value
RNA id TU125219
length 358
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G100232
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19712887 ~ 19713244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcgctagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactgagagactgagggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125103 lncRNA upstream 545053 19133064 ~ 19167834 (+) True G100145
TU125101 lncRNA upstream 587383 19120828 ~ 19125504 (+) True G100143
TU125015 lncRNA upstream 868438 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 1082743 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 1083316 18628322 ~ 18629571 (+) False G100046
TU125234 lncRNA downstream 13328 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 13328 19726572 ~ 19775290 (+) False G100241
TU125231 lncRNA downstream 15412 19728656 ~ 19729528 (+) False G100241
TU125233 lncRNA downstream 15412 19728656 ~ 19782763 (+) False G100241
TU125368 lncRNA downstream 611366 20324610 ~ 20327167 (+) True G100349
AMCG00015744 mRNA upstream 7793 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015742 mRNA upstream 40991 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015741 mRNA upstream 199962 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015737 mRNA upstream 603899 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015736 mRNA upstream 649033 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015746 mRNA downstream 49557 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015745 mRNA downstream 100346 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015748 mRNA downstream 154625 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015747 mRNA downstream 247300 19960544 ~ 19968342 (+) True AMCG00015747
AMCG00015756 mRNA downstream 322104 20035348 ~ 20038407 (+) True AMCG00015756
TU125009 other upstream 940921 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1386983 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2581138 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3581500 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3911253 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 554163 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2966966 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5151845 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6550671 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6659909 26373153 ~ 26377699 (+) True G101275

Expression Profile