RNA id: TU125234


Basic Information

Item Value
RNA id TU125234
length 543
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G100241
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19726572 ~ 19782763 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaaattgcccctgtcccaacttttgtGGAACGTGTTGcttgcatcaatttcaaaataaacgtttaccttcaaaaaacgatgcagttgattaggtaaaacatcaaataccttgtcttttatgttttttgtttaaatacaagtcaaagtacatttacaaatcactcctctttgtttttattagcattttccatactgtcccaactttttcggaattggggttgtacatGGCTGTAAAAAGGAAATGTCAAGTGAGAAAAGTTTATGTCTCCTGTTACTTCCACCTTTTCCTGGAGCGCTCTCCTAACAGTGAGGCTTGGATTTCACTCTTCATACTGagTTGTCTGAGTGCTGACATGCCTATTACTGAAGCAAACCAGAATTTAATAGAAATGCAGATCTTCCTGAACAAAAGCCTGAGCTATTTTAACatgtgcaagttacccatgccatgggcactgacacacccccataccatgacggacgctggcttttggacctgaaactgataacagcttggatggtccttttcctctttggcccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125219 lncRNA upstream 13328 19712887 ~ 19713244 (+) True G100232
TU125103 lncRNA upstream 558738 19133064 ~ 19167834 (+) True G100145
TU125101 lncRNA upstream 601068 19120828 ~ 19125504 (+) True G100143
TU125015 lncRNA upstream 882123 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 1096428 18628322 ~ 18630144 (+) False G100046
TU125368 lncRNA downstream 594046 20324610 ~ 20327167 (+) True G100349
TU125492 lncRNA downstream 1048782 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 1097764 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 1333486 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 1576042 21306606 ~ 21310605 (+) True G100507
AMCG00015744 mRNA upstream 21478 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015742 mRNA upstream 54676 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015741 mRNA upstream 213647 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015737 mRNA upstream 617584 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015736 mRNA upstream 662718 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015746 mRNA downstream 32237 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015745 mRNA downstream 83026 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015748 mRNA downstream 137305 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015747 mRNA downstream 229980 19960544 ~ 19968342 (+) True AMCG00015747
AMCG00015756 mRNA downstream 304784 20035348 ~ 20038407 (+) True AMCG00015756
TU125009 other upstream 954606 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1400668 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2594823 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3595185 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3924938 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 536843 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2949646 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5134525 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6533351 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6642589 26373153 ~ 26377699 (+) True G101275

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU132249 True 2700 TUCP 0.40 4 NC_053120.1 24749001 ~ 24755967 (-)
striped catfish (Pangasianodon hypophthalmus) TU354043 True 4983 lncRNA 0.41 2 NC_047613.1 20724944 ~ 20730010 (-)
striped catfish (Pangasianodon hypophthalmus) TU132249 True 2157 lncRNA 0.38 2 NC_047601.1 9255722 ~ 9257981 (-)