RNA id: TU125537


Basic Information

Item Value
RNA id TU125537
length 1314
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G100502
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 21064050 ~ 21065385 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTTGGCACCCTGCCGGAGCCAGTCCTTCAGATTCTCCTCGCCCAGGCCACAGCCGTCGAACACCAGGAAGCAGTCTGGGCCGTCTTGATGTAGCTCCATGCCCTGTGGTGGGGGTGTGGGTCCTTCCTGCGCTGGGAGGAGACTCAGGCTGTTCGTCAGGGTGTTGAAGCTCACCTCCACTAGCTTCTCAGAGTCTGAGAAAGAAATCAGACATGGCCGAGTTCAAAAGCTTGAGCTGGAGGGggaaattaattacataagAAATGCTGATGTGCATTTTCTAAGCTGAAGTCTAAATAAAGGCACTTTGGAAAAGCGGCTAACAAATGTTCTGACTTTGATAAGATCGTAAGTGATGAAGTTTACATGACGCTAATCCTTTTGTAACTAAAGTTAAAAGTTGATTAAGTTTCCTTCCAAATAATTAAGGCAGGGCTGTGTATTTTGGATTTCAatatgacattatatatatatatctattcttaaaaataatgaccACCTATGccattcataaaaatattaaatttgcatttgaatCGTTTGGCCAGGTATAGTATTTCAGTTAAAAGTACAGATAAATGGACAGTGTCTAACACCTAATACAAACCACTCTCTTCTTCGTGCCTAGCCCTTAACTTTTATATTATTGCAATTTCAACGTTTTATATTGAAAATCAGTGCAGACGGaagtaatgtttttcttaaatggtTAAGTCTCTTCCTTCTAGATCTTTCCACTGCCACAATATTTAGGACAGGGCCTACTCAATTTGGAGAAATCAGCAATTTCTGATTCCCACTGTACTATCTTCAAGCAGAAattcaaaccaaaaataaaaacatgcctaAGCAAGTGGAAACCACCACcccccacaaaacaaacactctgGTGGATCATAAACACTTTGGAAAACAGTCCAATTAATGGTCTTACAACATACTACAGTTGACATGCCATGAATGCATTCTTTCTTCTATAAATATCAGAAGCTTTATGAGTATTAAAAGATGCATTCAACATGTACTAAGCATAGAGCACATTATTTGAGATCTGCAAAACATGTAAGAGGTTAACGAGGTGTACTTGCTTCCCCAATTCAAGCTTAAGTTATAGTCTTACCAGTCGACATATGAGAAAAGGATAATTTTTACCAGAAAATCTGACTCTGCCCCAGATATTGTATATGTTTCCTGTGAAAGGATTTGGTCGCAAGGATGATTTTAATGCTgtgaaacagacacaaaaaaataattagtagCTATAGCTGTAGAACATAATTTTGCATTCTGcgttttagatttaaaaaggCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125516 lncRNA upstream 235436 20828328 ~ 20828614 (+) True G100483
TU125492 lncRNA upstream 283583 20779346 ~ 20780467 (+) True G100461
TU125368 lncRNA upstream 736883 20324610 ~ 20327167 (+) True G100349
TU125233 lncRNA upstream 1281287 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 1288760 19726572 ~ 19775290 (+) False G100241
TU125542 lncRNA downstream 241221 21306606 ~ 21310605 (+) True G100507
TU125610 lncRNA downstream 748986 21814371 ~ 21814715 (+) True G100568
TU125695 lncRNA downstream 1223238 22288623 ~ 22288848 (+) True G100639
TU125697 lncRNA downstream 1380989 22446374 ~ 22449216 (+) True G100641
TU125775 lncRNA downstream 1755116 22820501 ~ 22820703 (+) True G100707
AMCG00015779 mRNA upstream 10908 21046770 ~ 21053142 (+) True AMCG00015779
AMCG00015774 mRNA upstream 260196 20802997 ~ 20803854 (+) True AMCG00015774
AMCG00015775 mRNA upstream 261117 20802697 ~ 20802933 (+) True AMCG00015775
AMCG00015773 mRNA upstream 289430 20760830 ~ 20774620 (+) True AMCG00015773
AMCG00015767 mRNA upstream 407523 20622793 ~ 20656527 (+) True AMCG00015767
AMCG00015781 mRNA downstream 91769 21157154 ~ 21224579 (+) True AMCG00015781
AMCG00015782 mRNA downstream 161895 21227280 ~ 21229655 (+) True AMCG00015782
AMCG00015786 mRNA downstream 980564 22045949 ~ 22065359 (+) True AMCG00015786
AMCG00015787 mRNA downstream 1037733 22103118 ~ 22146071 (+) True AMCG00015787
AMCG00015788 mRNA downstream 1100846 22166231 ~ 22178257 (+) True AMCG00015788
TU125356 other upstream 795765 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 2292084 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 2738146 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 3932301 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 4932663 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 1614825 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 3799704 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 5198530 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 5307768 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 6825167 27890552 ~ 27992014 (+) False G101400

Expression Profile